PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy10g03950
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 738aa    MW: 81595.3 Da    PI: 9.9235
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy10g03950genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-15109161148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 
                      +g WT+ Ed+ l +av+ + g++Wk+Ia+++      ++Rt+ qc +rwqk+l
    Bathy10g03950 109 KGGWTPAEDDVLRRAVAIYKGKNWKKIAEYFKtnegvEKRTDVQCLHRWQKVL 161
                      688**********************************99***********986 PP
2Myb_DNA-binding57.82.5e-18167213148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEde+++ +v++lG ++W++Ia+ ++ gR +kqc++rw+++l
    Bathy10g03950 167 KGPWLKEEDEKIISLVAELGAKQWSKIAQQLP-GRIGKQCRERWYNHL 213
                      79******************************.*************97 PP
3Myb_DNA-binding49.11.3e-15219263147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  W++eEd+ll++ +++ G++ W+ Ia+ +  gRt++ +k++w++ 
    Bathy10g03950 219 REDWSEEEDLLLIRKHQECGNK-WADIAKNFV-GRTDNAIKNHWNST 263
                      678*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.818104161IPR017930Myb domain
SMARTSM007171.8E-13108163IPR001005SANT/Myb domain
PfamPF002493.7E-13109161IPR001005SANT/Myb domain
SuperFamilySSF466893.73E-13110171IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-19111173IPR009057Homeodomain-like
CDDcd001673.60E-11112161No hitNo description
PROSITE profilePS5129431.178162217IPR017930Myb domain
SuperFamilySSF466899.73E-29164260IPR009057Homeodomain-like
SMARTSM007174.3E-17166215IPR001005SANT/Myb domain
PfamPF002492.3E-17167213IPR001005SANT/Myb domain
CDDcd001672.18E-15169213No hitNo description
Gene3DG3DSA:1.10.10.605.6E-26174220IPR009057Homeodomain-like
PROSITE profilePS5129421.44218268IPR017930Myb domain
SMARTSM007177.6E-16218266IPR001005SANT/Myb domain
PfamPF002492.4E-14219263IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-21221268IPR009057Homeodomain-like
CDDcd001678.60E-12222264No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MPPGRPPLTK IINALQKKKA TMISKKKTNV KTKTKKKPLK MKEEDFFFNS SGGMMMTEEE  60
EEEEENNRIL AHGNDEEEKN YETNGMNLKE ILTQRLEGRV GGPTRRSAKG GWTPAEDDVL  120
RRAVAIYKGK NWKKIAEYFK TNEGVEKRTD VQCLHRWQKV LNPELVKGPW LKEEDEKIIS  180
LVAELGAKQW SKIAQQLPGR IGKQCRERWY NHLNPEIKRE DWSEEEDLLL IRKHQECGNK  240
WADIAKNFVG RTDNAIKNHW NSTLKRRVEE AYAKGLPAEA AAFHNSSDEN GKKLSSGKGT  300
KSAKASAKNQ SQQASLIVAK TSTAEYRKYV VSNDDGEDIF DPLAGTVFAE TKTNRKTLGG  360
TVGATKRAAE MGGKKNNGEN AKKYRKKDSS NDAGLVSAAA GAPYEMNNHH RQHHHHNSPS  420
TRFHFQSPNT YAAAAARTPT DVRKYANEED AERGFEDVFD EHDNTMVHSP LASPSLLNWV  480
NGGGVTTRVT PGRLHAQTNA REGTMYDKYV ASPQQHDSPT NRLLSPEMKK KMATTTMMTT  540
TSAHHHSDPS NIPFHDMYQK MQQQLLQQKE AERINMTGGA SVDPPPAPTK APRGFADGSC  600
AFDNTAITFQ SPPARGGNDV STSAQMHADG DGDVTANGLV VAGLGKVSNY DGTGKKTKKN  660
NNRLSHLFRM GQDNSVGGAN NGGSGERMPS VLRGKQERET LEHHIAASPP RAMKLADAGM  720
PINFAGGFSP SNFLNRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-591092686159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-591092686159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822690.0FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510485.10.0unnamed protein product
TrEMBLK8F8U20.0K8F8U2_9CHLO; Unnamed protein product
STRINGXP_007510485.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.26e-76myb domain protein 3r-4