PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy10g00280
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family CPP
Protein Properties Length: 672aa    MW: 72448.6 Da    PI: 9.4697
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy10g00280genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-15345381340
            TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    +k+CnCkkskClk+YC+Cfaag++C + C+C++C+N+e
  Bathy10g00280 345 SKKCNCKKSKCLKLYCDCFAAGVFCRD-CSCQSCSNTE 381
                    79*************************.********97 PP
2TCR50.54e-16415454140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k+ kgC+Ckks ClkkYCeCf+a++ C++ CkCe+CkN++
  Bathy10g00280 415 KHAKGCHCKKSACLKKYCECFQANVRCQDYCKCEGCKNTT 454
                    589***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.3E-14343383IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.419344455IPR005172CRC domain
PfamPF036388.0E-12346381IPR005172CRC domain
SMARTSM011147.5E-14415456IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.1E-12418453IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MEVSFVTVFF EVHVSRKMTP SFFTILTSHA TYKMGISNMD DIMKTPERPK KNGNGDIDPS  60
IINSPFMNFV SNLSPIRFGA SSLGGNNTVV PICFSSPSAF KSPPRKRSED NGNHNHNNTV  120
SSLANDMGPI PDSLMVPFAH EKHQHEDADD QDDFVGGIGG TMGAITLEDE LLQLDNKFNN  180
KVNNNKHNNS GGKGDKTTAK KSGGDQKKSA KKNGGKNNNA SVSPPTGSSK RQSTTGASLE  240
WNSGFSKTIR GKAADSPRDH PVGTENRKAG ATPMASTKKS SRRDSLTSSN DEHITPPVGK  300
SKSDGGSKVK NTRDLQTPGS NTKLTFADKL DQSKLDEGID FDGASKKCNC KKSKCLKLYC  360
DCFAAGVFCR DCSCQSCSNT EGDLEVVRQT RYQIESRNPN AFANKIVDDD SVDAKHAKGC  420
HCKKSACLKK YCECFQANVR CQDYCKCEGC KNTTDGANPS QNGGAATATK TTITTTTTTT  480
AVREDEGKIL TNTNEAKKKV EGLKKSIVGS VRDSDTSFIL NSPAREAARA AQRMLADDVF  540
MDDMSFVNYG HGNLASPLRT LLHSETGLSP MFQRVNDDKG ATATNSRQCK KENNDVNANN  600
KSNSVGNNTK ASSKTRGAAG RFSFSKTNSA MNTRRKAPVP LFTDDTNNVE EKTPARTTRS  660
RGSPKLVTPS V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1934645512123Protein lin-54 homolog
5fd3_B6e-1934645512123Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822690.0FO082269.1 Bathycoccus prasinos genomic : Chromosome_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510801.10.0predicted protein
TrEMBLK8EK200.0K8EK20_9CHLO; Uncharacterized protein
STRINGXP_007510801.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-25TESMIN/TSO1-like CXC 2