PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g03950
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 534aa    MW: 59069.5 Da    PI: 6.4095
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g03950genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.9e-08445466426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    e Cr+f+  G C +G++Ck++H+
  Bathy09g03950 445 EACRNFQM-GRCTRGNQCKYSHD 466
                    68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1370.103.9E-1257133IPR004088K Homology domain, type 1
SuperFamilySSF547911.75E-1059133IPR004088K Homology domain, type 1
SMARTSM003221.3E-762132IPR004087K Homology domain
PROSITE profilePS5008412.60163127IPR004088K Homology domain, type 1
PfamPF000138.6E-867127IPR004088K Homology domain, type 1
CDDcd001051.29E-967127No hitNo description
SMARTSM003223.6E-4148220IPR004087K Homology domain
PROSITE profilePS5008410.923149215IPR004088K Homology domain, type 1
SuperFamilySSF547913.36E-7151220IPR004088K Homology domain, type 1
PfamPF000132.3E-4153216IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.7E-6154221IPR004088K Homology domain, type 1
SMARTSM003562.1E-4441467IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596441468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5444466IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5445466IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4445467IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEEEMMIERD EEEEPKRRTR SPPPQTQTEE GAQKIPVLVG GEEDLENTNN TNTTATKNEE  60
EDEIKDELEI GRNEAGFLIG ERGATKRKVQ KVSQTKIEIA DSEINPETSI VTIRGTETNR  120
AKARRYVAWV LRQPEGKIFC DLGDDVVREN VSVVDVPAEA MAFVVGAKGK TLRSVEEEYG  180
TLMFFGHTEK DQPDSSEKLI ICGDRENRRG AELKVMSSVE TKVQGYFVDY EKNDPELKQP  240
LMQPGDGLKD GFAYDQFPFT EEEFSYALGK FGRVRRKLAK ASGCVMEYVG RVAIMSGNKE  300
QRARCWDYTN WLMKQRRNNG TCSVDPNARN DCEICDVPGS IDLPRLQGNC HKVEEATGTF  360
IFTTDFEKPV AEGQDKTLLI CSHDSASRRK ARRMVEDLID GRRDVFQDNN RGGPRGRGGG  420
GGNRGRGGQQ QQQRGMRNDG GGAAEACRNF QMGRCTRGNQ CKYSHDMSMA PMQMGGGSGA  480
NRGGRGYDDN HPRNNNNMNN NGGGRGGGSQ IINRLSRGGN SGGGGNGNRG RPY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511299.10.0predicted protein
TrEMBLK8FIH50.0K8FIH5_9CHLO; Uncharacterized protein
STRINGXP_007511299.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP641222