PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g02890
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 525aa    MW: 58383.6 Da    PI: 8.5092
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g02890genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.6e-13327353127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    yktelCr + +tG+C+y d+C+FaHg+
  Bathy09g02890 327 YKTELCRSWIETGECRYNDKCQFAHGR 353
                    9************************96 PP
2zf-CCCH38.42e-12365389125
                    --S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                    ykt  Cr++  tG+C+yG+rC+F+H
  Bathy09g02890 365 YKTQVCRTYTTTGQCPYGNRCRFIH 389
                    9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-17322357IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-10325358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145326354IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8326353IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10327353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-13360390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-9360390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023364392IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-9364391IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9365389IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MCLEGAITRE QRERLEQTER EDLEKAFSKK LSLVDDGKSG GGRKASSSSS SSKKNADAAT  60
TESSDLREVI EKKRAGASAE KGVGKSGEKV NKEQQHAQSP STKNSRQRRA EMRKEKREGA  120
QETKKKSSDK STSVAQAATA ASESGKKKKK ENDVGGEALE VLKKSQEEAA KMEKKKKEEE  180
EKSTADEEGP PGYPQPKYSD YLAKKETEKE EETKKKEYTS PFAHILQCAP TPLPPSFDTP  240
QGARGEGFVL GDRDKVPTSL FNVDSTWQGS AAFAPPTKLT RESIKSIPSF TPGTPVKTNN  300
NNNNNNKPRE RIPREEKDDH LTANDLYKTE LCRSWIETGE CRYNDKCQFA HGRDELRCVV  360
RHPKYKTQVC RTYTTTGQCP YGNRCRFIHE KLPEKGVLGT LATNGHYVIT EDWKPGGGKD  420
PLCLRKNVSG EFGDIAVTED SKDEDNTPKR LGIFRHITHD ESLSLSEGQS SPPSSPTSAE  480
EGEIRGARTY QEQDQQHQRA NQNLEFEGFA GPIPRTPDLS KRYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A5e-24319389272Tristetraproline
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511005.10.0predicted protein
TrEMBLK8F3B30.0K8F3B3_9CHLO; Uncharacterized protein
STRINGXP_007511005.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-24C3H family protein