PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g02260
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family AP2
Protein Properties Length: 502aa    MW: 57187.6 Da    PI: 6.2313
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g02260genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.91.7e-10269332155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng.......kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ +GV+ ++ +gr++A+++d s  +         r ++++lg + t+ eAak +++a+ kl+g
  Bathy09g02260 269 SQMRGVTKHRLTGRYEAHLWDSSLaRAtpkpggrTRgRQIYLGGYLTELEAAKSYDKAAIKLWG 332
                    678******************7777446667776237**********99*************98 PP
2AP226.61.5e-08375437155
            AP2   1 sgykGV..rwdkkrgr.........WvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV  + ++++++         W++++  ++      k+++lg+f+t+ eAa+ ++ a +k++g
  Bathy09g02260 375 SKYRGVtkYVKSTTNQqgkastkqlWESRLGRVK----GsKYVYLGTFDTEIEAARGYDLASLKYRG 437
                    6777776544444444666777778**9966642....35**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-11269341IPR016177DNA-binding domain
CDDcd000184.71E-15269341No hitNo description
PROSITE profilePS5103216.041270340IPR001471AP2/ERF domain
SMARTSM003803.0E-22270346IPR001471AP2/ERF domain
PfamPF008477.7E-6271332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-12271340IPR001471AP2/ERF domain
CDDcd000181.71E-16375445No hitNo description
PROSITE profilePS5103214.341376445IPR001471AP2/ERF domain
SMARTSM003804.4E-15376451IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-11376446IPR001471AP2/ERF domain
PfamPF008477.9E-5395437IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-9398445IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSAEDETTAA TTSTLLAIDN DNDDEALRSF VETLTLKDQE KKKKNAHAPA SDTFSLPPCL  60
DYYLDQLLRN SSSDEDEEGG ASCYETRDGG HLPPLLVSSG CLEQPEKRKK KRLKSCLELI  120
MNHEEEHYLP SSPPEEEAQR NNTMLMHDEK QEGILRFMNR DKDIDVWGVC MSDATRANNP  180
KRKSNFNFED EDDEALIPSD NFFSSEDTMT ISVTIPDQTR FPLNEEMWRA NASKKEPDVA  240
VKDIKKKRSL HAVPKSNRRA KPQNPSRTSQ MRGVTKHRLT GRYEAHLWDS SLARATPKPG  300
GRTRGRQIYL GGYLTELEAA KSYDKAAIKL WGRDANLNFD YETYAEDIQM MKSYDFAAYV  360
AALRRESSGF TRGVSKYRGV TKYVKSTTNQ QGKASTKQLW ESRLGRVKGS KYVYLGTFDT  420
EIEAARGYDL ASLKYRGDKA VTNFDKCNYS ETEIETFKFP HRADARDETD DSDDDDNDVT  480
KNKHEKIEKK KEKKKDEKLE P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105112EKRKKKRL
2106113KRKKKRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510955.10.0predicted protein
TrEMBLK8F3640.0K8F364_9CHLO; Uncharacterized protein
STRINGXP_007510955.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-55AP2 family protein