PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g02110
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 367aa    MW: 40609.5 Da    PI: 10.2087
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g02110genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-10242290147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                      r r+T+eE + l+d+v+ +G g W+ I         Rt+ ++k++w+++
    Bathy09g02110 242 RERFTEEEVKALIDGVAAYGLGKWSEILTQSFgqSERTGVDLKDKWRNL 290
                      78*************************988766*99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.901.7E-495181No hitNo description
SuperFamilySSF542363.7E-6100179IPR029071Ubiquitin-related domain
Gene3DG3DSA:1.10.10.602.9E-12236290IPR009057Homeodomain-like
PROSITE profilePS5129412.533237295IPR017930Myb domain
SMARTSM007171.4E-7241293IPR001005SANT/Myb domain
PfamPF002492.1E-7242290IPR001005SANT/Myb domain
CDDcd116604.42E-19244291No hitNo description
SuperFamilySSF466897.48E-14244304IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAAPKKKKGV VSKGTLKAVP AKKKAAVAKK APAKKAPVKK QRPQADSSDD DANEEEKKPH  60
IQIHQQQQQL VPRPQQPIAA RNNIPLDPYA FSPDDEADAN KKYQFSVMCM MGKDINIPLQ  120
LDIEKDAAIT ALKKKISDRT GGKLALNDMI LTLGANVCKR SMTVRQAGIK NNVQIILTLK  180
EDLAKFKVSL SDERDMTQEE VRAALQMVGV AVDVVDDIDP EDKVKSQQKK PYRNADGKAK  240
DRERFTEEEV KALIDGVAAY GLGKWSEILT QSFGQSERTG VDLKDKWRNL TLAASRPPGF  300
TFRVSYMNAE LLQRVREVKA QVEEKKKKAA AFRDQKSGRS RQDDIAKAQA EAAQNIQAHG  360
DLGYHA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511055.10.0predicted protein
TrEMBLK8F3F90.0K8F3F9_9CHLO; Uncharacterized protein
STRINGXP_007511055.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP736355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.13e-11TRF-like 3