PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy08g04690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | NF-YB | ||||||||
Protein Properties | Length: 138aa MW: 15240.5 Da PI: 4.6756 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 56.6 | 6.3e-18 | 3 | 96 | 3 | 96 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 ++++ lP a + +++ +P+ ++s+d ++++ e +ef+ ++sea+d + +e++ ti+++ ++ al +lGf+d++++ ++ ++ +++ ++ Bathy08g04690 3 NDEQSLPKATINKMISDSIPEGLRLSNDLRDLLLESCTEFVLSISSEATDISTKENKTTITPEHVIAALKKLGFDDFIDECTKEMEIEKDVAKD 96 67899**************************************************************************998877766666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.8E-32 | 2 | 134 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.19E-31 | 4 | 132 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-14 | 7 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MENDEQSLPK ATINKMISDS IPEGLRLSND LRDLLLESCT EFVLSISSEA TDISTKENKT 60 TITPEHVIAA LKKLGFDDFI DECTKEMEIE KDVAKDKRIE KKKKKDMGMS AEEAMALQAK 120 MFAEAKARMA GQQQGGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 4e-28 | 3 | 126 | 11 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 103 | KRIEKKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082271 | 0.0 | FO082271.1 Bathycoccus prasinos genomic : Chromosome_8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007511488.1 | 5e-95 | predicted protein | ||||
TrEMBL | K8EHW5 | 1e-93 | K8EHW5_9CHLO; Uncharacterized protein | ||||
STRING | XP_007511488.1 | 2e-94 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-25 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Entrez Gene | 19014448 |