PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g04400
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 655aa    MW: 71366.9 Da    PI: 6.647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g04400genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding408.9e-132367147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT eE+ l+v+a++++  + Wk I +++   ++  q++s+ qky
    Bathy08g04400 23 RESWTDEEHGLFVEAIALYQRN-WKQIKEHVK-SKSIIQIRSHAQKY 67
                     789*****************66.********9.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-151773IPR009057Homeodomain-like
PROSITE profilePS5129417.2291872IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-62068IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-142170IPR006447Myb domain, plants
SMARTSM007171.1E-82270IPR001005SANT/Myb domain
PfamPF002497.6E-102367IPR001005SANT/Myb domain
CDDcd001679.60E-72568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MEKEEQEEVN IKARKEYTIT KSRESWTDEE HGLFVEAIAL YQRNWKQIKE HVKSKSIIQI  60
RSHAQKYFLK IEKLGTGEAV PPPRPKKKAS RPYPHKAVKP PPPAPPPSAK VVVHEQQQHE  120
VPVKTTGDGT ADATATKNGS SLVEAASGLP SSPSKKLSPK KQLQKQEVSQ SNNYNNNTNA  180
SDEGNKKAKQ STPKKEKKAA KPKTTGTKKN ANTMKKNTKT QKSSLLHPGN EPPTDDLFRS  240
DDQLAGMVDD EAEDDEDDDD ENNREIMNSN DASGGGSAED DAINRLVDSN NGTATTSYKE  300
TGGHNKELMM TATDFINNNN ISDEDDNSGG GSKSNHQCMT HEYITQQMNE MQEQVRNSLT  360
GATYEVQKGS KRKAPNTPTS KGTDRKKGIG SGGPSRLGGF HQQHQQNTNQ SAHGSNLGGA  420
GQQVNGGDQL QHSAWNPTQN NSLTDAQRKK ANQNTPNFQV VYSTFARMLE NDSISAEEAA  480
ENLQNMRPID RETTVLLVDN LKKNLLSKRM WEDQMQLVGS GYQTFLNASS DASAEEKQAK  540
LVESAVNSMK FNSESARDAT AATLTSDALV PTSMATQQTR PYPYMQMTKR DSDGTFEEAN  600
NGDDNNNTNT DSGNNDSGNE KKGSDGGSGG TGQSQQTFVD VVTDKKRAAA AAVQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00560DAPTransfer from AT5G52660Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511709.10.0predicted protein
TrEMBLK8EZA30.0K8EZA3_9CHLO; Uncharacterized protein
STRINGXP_007511709.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.12e-26MYB_related family protein