PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g03820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family HB-other
Protein Properties Length: 530aa    MW: 61017.9 Da    PI: 4.8739
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g03820genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-07433482854
                    -HHHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox   8 tkeqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     ke l +L+++ +k    +yp++e+++ + +k+ L+ +q+ +WF N+R +
  Bathy08g03820 433 PKEALIVLKQFWNKkicWPYPTEEDKAAIKAKTTLDATQINNWFINQRKR 482
                    5677777777777533369*****************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.965423486IPR001356Homeobox domain
SMARTSM003891.0E-6425490IPR001356Homeobox domain
SuperFamilySSF466891.33E-14425490IPR009057Homeodomain-like
CDDcd000861.17E-7426484No hitNo description
Gene3DG3DSA:1.10.10.608.0E-21429488IPR009057Homeodomain-like
PfamPF059205.6E-14446482IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MTTTKRVEDE AMLFFTTDDD GDTNDASLAL PTDFFHVFDD ESKNRRRAAA KREGGCRRVE  60
DNGDVDAIIS ENASWNNDDD DVQEDFLLAP PPPREDDDDD REEDEGLKTF AAIQNDDEDI  120
IDDEWNKLLE RHGLDVEKRR RRDEVFIGTT NTTSNAEKKK KKKKKEKRDD RLAPAEAKAA  180
SRKATTTEKR TREEFILAVR THEKFREYVE IMMTCRKLTA QTKRERESLE KKDKEFLAKL  240
DAERENTRLS DVSPSPTSSS NVTTFTMDSS EERENIELCR IPDSFFRRDS LERICEDAKF  300
KQELNAFMEH SCENARKFQK ELTAIYDETD RACESFDAKM KELTLLESNN SKNSPNTIGA  360
TATGAASKKR KQGAEEAEKE TVDGQDSDED DRSFQLSMKS DEAFRNQLLA KYKDDIPALE  420
EEWLNKKPKG KLPKEALIVL KQFWNKKICW PYPTEEDKAA IKAKTTLDAT QINNWFINQR  480
KRHWLKMFKF GKSPTCEAES KAKLLEKFGN LDAAIAFCDR NTKSSIDVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139161RRRDEVFIGTTNTTSNAEKKKKK
2158164KKKKKKK
3159167KKKKKKEKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511678.10.0predicted protein
TrEMBLK8EIF40.0K8EIF4_9CHLO; Uncharacterized protein
STRINGXP_007511678.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.15e-23KNOTTED-like from Arabidopsis thaliana 2