PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bathy08g03820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 530aa MW: 61017.9 Da PI: 4.8739 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.3 | 1.1e-07 | 433 | 482 | 8 | 54 |
-HHHHHHHHHHHHH...SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 8 tkeqleeLeelFek...nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ke l +L+++ +k +yp++e+++ + +k+ L+ +q+ +WF N+R + Bathy08g03820 433 PKEALIVLKQFWNKkicWPYPTEEDKAAIKAKTTLDATQINNWFINQRKR 482 5677777777777533369*****************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.965 | 423 | 486 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-6 | 425 | 490 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-14 | 425 | 490 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.17E-7 | 426 | 484 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-21 | 429 | 488 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.6E-14 | 446 | 482 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0010094 | Biological Process | specification of carpel identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 530 aa Download sequence Send to blast |
MTTTKRVEDE AMLFFTTDDD GDTNDASLAL PTDFFHVFDD ESKNRRRAAA KREGGCRRVE 60 DNGDVDAIIS ENASWNNDDD DVQEDFLLAP PPPREDDDDD REEDEGLKTF AAIQNDDEDI 120 IDDEWNKLLE RHGLDVEKRR RRDEVFIGTT NTTSNAEKKK KKKKKEKRDD RLAPAEAKAA 180 SRKATTTEKR TREEFILAVR THEKFREYVE IMMTCRKLTA QTKRERESLE KKDKEFLAKL 240 DAERENTRLS DVSPSPTSSS NVTTFTMDSS EERENIELCR IPDSFFRRDS LERICEDAKF 300 KQELNAFMEH SCENARKFQK ELTAIYDETD RACESFDAKM KELTLLESNN SKNSPNTIGA 360 TATGAASKKR KQGAEEAEKE TVDGQDSDED DRSFQLSMKS DEAFRNQLLA KYKDDIPALE 420 EEWLNKKPKG KLPKEALIVL KQFWNKKICW PYPTEEDKAA IKAKTTLDAT QINNWFINQR 480 KRHWLKMFKF GKSPTCEAES KAKLLEKFGN LDAAIAFCDR NTKSSIDVE* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 139 | 161 | RRRDEVFIGTTNTTSNAEKKKKK |
2 | 158 | 164 | KKKKKKK |
3 | 159 | 167 | KKKKKKEKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FO082271 | 0.0 | FO082271.1 Bathycoccus prasinos genomic : Chromosome_8. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007511678.1 | 0.0 | predicted protein | ||||
TrEMBL | K8EIF4 | 0.0 | K8EIF4_9CHLO; Uncharacterized protein | ||||
STRING | XP_007511678.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5451 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G70510.1 | 5e-23 | KNOTTED-like from Arabidopsis thaliana 2 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 19014361 |