PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy08g01970

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

Dof

Protein Properties

Length: 1019aa MW: 107299 Da PI: 5.5359

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy08g01970	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	89.7	2.5e-28	553	609	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++c+rC+s++t+fCyynn lsqPr++C+aC+ryWt+GG+ rn+P G+grrk++ Bathy08g01970 553 NHRPCARCNSNETRFCYYNNGLLSQPRHYCRACQRYWTEGGTQRNLPKGSGRRKDRG 609 6789**************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	1.8E-22	3	144	No hit	No description
SuperFamily	SSF52172	2.99E-19	6	145	IPR011006	CheY-like superfamily
SMART	SM00448	3.9E-18	6	141	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	30.983	7	145	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	2.0E-14	8	140	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	2.24E-17	9	145	No hit	No description
Pfam	PF02701	3.6E-24	553	608	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.279	555	609	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-19	556	608	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	557	593	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005622	Cellular Component	intracellular
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MNNASKKILV VDDIGLCRRI TTNQLEQLGF KDSPVATSGK EAIQYIDEKQ GEVQCILLDI 60 MMPQENGVET LAEIRKHEKF RREHLEPGHE EEEPIKVIAV TALKHGELLS LCESTGEAGH 120 SVMFDGYIEK PATLTKIRDA METAAIMFAS SLPSGLDQKT RKINNNNNNN NNNNSTKNLA 180 TLAAPAKVQR GNSDGGSGGS DPITDGGGSG GRGGSNEGTD TRNKGSNEVD NGTSSDEKGQ 240 TQSKGLGGKM SAKAGKEKKQ DQIDKLKKEE EENDDENNKH KRAASPGLGG NKVRPTHSGE 300 TTSAAPEHDL EKYGSNERNV GGGNQSKRAH FNEGDNAAAG NENTDGISNE DATNKKETTV 360 LENVYDKNRS ERRSERSKRN QSQTRHSPSR RGARDMNNTD DDDEGNDTGN EKDTDSGEHQ 420 GSAGGSGKNS EEPNPRGMSP QANSGGSREG SGGSGNDGSG GSGAETTLNI QMPKEGDKDR 480 GGQVKVKIAK DEDVEDEADR NSPDENGDMP MTPATDIIEQ RDAQQQQQQM QPQKTQKELE 540 REQNIAGRED VNNHRPCARC NSNETRFCYY NNGLLSQPRH YCRACQRYWT EGGTQRNLPK 600 GSGRRKDRGA PNVHHASGYG GGDGDGADGR NNTETPAMNA AAGLAGLASA AGNALGGAGP 660 AFLRQPPNIA AAAAVARQQV LLPNSMVGVP STASNGSNQL PFNFPGVSAA QIATAARNAA 720 GGGFGSVGSQ PGANADAAVL AGMHSASNAD AQVAQLLSSV AGYDVNLAAS LVGFAAARVG 780 EEIARNAKMI HGDSPGADIS ERVVTLAKIT GWRIGTAIST IAMSSVEHGM VQADVNTLVQ 840 AQLPIVTSQA TMEANAILQT MSSSTTSEKP QSETENNDNI SGGKKATGSG NSGGSGGTGV 900 DSMGNNVNAQ ATSAPEATIL AMQQAQQAAV ARWMNDLGGA PFMQQQQQQL QQLQQQQQQQ 960 QQLLLLQQQQ QQQQGGKSAQ AAQYASLLMN LTGGEAVDAK ATPKRKTNEV KKSTNNSS*

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MNNASKKILV VDDIGLCRRI TTNQLEQLGF KDSPVATSGK EAIQYIDEKQ GEVQCILLDI  60
MMPQENGVET LAEIRKHEKF RREHLEPGHE EEEPIKVIAV TALKHGELLS LCESTGEAGH  120
SVMFDGYIEK PATLTKIRDA METAAIMFAS SLPSGLDQKT RKINNNNNNN NNNNSTKNLA  180
TLAAPAKVQR GNSDGGSGGS DPITDGGGSG GRGGSNEGTD TRNKGSNEVD NGTSSDEKGQ  240
TQSKGLGGKM SAKAGKEKKQ DQIDKLKKEE EENDDENNKH KRAASPGLGG NKVRPTHSGE  300
TTSAAPEHDL EKYGSNERNV GGGNQSKRAH FNEGDNAAAG NENTDGISNE DATNKKETTV  360
LENVYDKNRS ERRSERSKRN QSQTRHSPSR RGARDMNNTD DDDEGNDTGN EKDTDSGEHQ  420
GSAGGSGKNS EEPNPRGMSP QANSGGSREG SGGSGNDGSG GSGAETTLNI QMPKEGDKDR  480
GGQVKVKIAK DEDVEDEADR NSPDENGDMP MTPATDIIEQ RDAQQQQQQM QPQKTQKELE  540
REQNIAGRED VNNHRPCARC NSNETRFCYY NNGLLSQPRH YCRACQRYWT EGGTQRNLPK  600
GSGRRKDRGA PNVHHASGYG GGDGDGADGR NNTETPAMNA AAGLAGLASA AGNALGGAGP  660
AFLRQPPNIA AAAAVARQQV LLPNSMVGVP STASNGSNQL PFNFPGVSAA QIATAARNAA  720
GGGFGSVGSQ PGANADAAVL AGMHSASNAD AQVAQLLSSV AGYDVNLAAS LVGFAAARVG  780
EEIARNAKMI HGDSPGADIS ERVVTLAKIT GWRIGTAIST IAMSSVEHGM VQADVNTLVQ  840
AQLPIVTSQA TMEANAILQT MSSSTTSEKP QSETENNDNI SGGKKATGSG NSGGSGGTGV  900
DSMGNNVNAQ ATSAPEATIL AMQQAQQAAV ARWMNDLGGA PFMQQQQQQL QQLQQQQQQQ  960
QQLLLLQQQQ QQQQGGKSAQ AAQYASLLMN LTGGEAVDAK ATPKRKTNEV KKSTNNSS*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082271	0.0	FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007511560.1	0.0	cycling DOF factor 2
TrEMBL	K8EI31	0.0	K8EI31_9CHLO; Cycling DOF factor 2
STRING	XP_007511560.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4655	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	9e-24	cycling DOF factor 1

Link Out ? help Back to Top
Entrez Gene	19014176