PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g00970
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family CPP
Protein Properties Length: 322aa    MW: 35002.2 Da    PI: 8.9649
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g00970genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.63.8e-161959242
            TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                   ++k+CnC++s+Clk+YCeCfa+g++C ++C+C +CkN+ e+
  Bathy08g00970 19 DRKTCNCRNSRCLKLYCECFASGQYCLQNCNCVECKNNVEN 59
                   6799*********************************9875 PP
2TCR51.81.6e-1694133140
            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    k++kgC+Ckks ClkkYCeCf+a  +Cs+ C+C dCkN e
  Bathy08g00970  94 KHNKGCHCKKSGCLKKYCECFQASIFCSDMCRCLDCKNFE 133
                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.9E-131859IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.01419134IPR005172CRC domain
PfamPF036383.9E-122156IPR005172CRC domain
SMARTSM011143.1E-1994135IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.4E-1397132IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MIPPVEGGLP LNNANIQTDR KTCNCRNSRC LKLYCECFAS GQYCLQNCNC VECKNNVENS  60
VQRQEAVEAT LERNPNAFRP KVLPTLNGGE GDEKHNKGCH CKKSGCLKKY CECFQASIFC  120
SDMCRCLDCK NFEGSDAHKA IASQQEFMPA GSDASLLVAP GLQMDVNKTN GGAMKQEAYV  180
PQKSPMGFAA KGGASPHFLK TKKPILHGLI KPNAVDQLGE ALLSAAEVAR KRAHDQVAYD  240
ALKRRTPQPP PLSTNGGKIT AKKSPTKSPS KSNNNKIAKI AEEESTAKLV YAEQEKTVLK  300
KLLTEVTQLA DAAEKRIQSR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-322014111130Protein lin-54 homolog
5fd3_B5e-322014111130Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511581.10.0unnamed protein product
TrEMBLK8EHS00.0K8EHS0_9CHLO; Unnamed protein product
STRINGXP_007511581.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.13e-45Tesmin/TSO1-like CXC domain-containing protein