PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy07g03390
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family G2-like
Protein Properties Length: 739aa    MW: 81644.4 Da    PI: 8.1309
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy07g03390genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like888.8e-28507559255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +rl+W+ eLH+rF++av++L G + A+Pkti+++m+v+gLt+e+v+SHLQkYRl
  Bathy07g03390 507 NRLVWNDELHRRFMNAVNHL-GLDAAVPKTIMQMMNVEGLTRENVASHLQKYRL 559
                    7*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.807503562IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-27504560IPR009057Homeodomain-like
SuperFamilySSF466892.15E-17505561IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24507561IPR006447Myb domain, plants
PfamPF002491.2E-6509558IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MAASRITRKR TNASSSGKAK KFPPPSSSTK SVHEVAILKN EQKEEDKKRD EKPGCDEITD  60
PKRGGNDQSN NEALENYSIP LIHANAAAKT VDANPHLSPP KFSYKKVPSN TIIQPSSSAG  120
NEWTPRHFPV FSLQQQQQHH QQHHHQQQHH QQQQMLQMMM SHHAGMMDPS SNAFMQYNNY  180
GANGGAAGGA ANHHAQNNVL MGNPIHDFLQ MQQNPTAFPT RYLINAQNGP FPFPWPPVGM  240
PPFPTFPAAA GMSGARHQID NAAAPPPTTT PLLVKRGEGD AQQKVDEYDK NENNTQKKSN  300
AAAAAGVAAA TAAEDQENEK DTRTVMTTTR LAENGSGMSS DNFQTTTVTT AANNTFGSVS  360
NGKKTATRVL PTEEQLEHRQ RYLQQQQQLN QFNAFNALQQ SGAAYSAYAA ALSMGQPNTD  420
SPSFAAQHAF QQHQQQQQHL HNMMNNNFNS NQQHQQQMYL HQQQHQQQQQ QQQQHQEHEY  480
QQPPPHSQTT TTTPKKGKQG VPKSNRNRLV WNDELHRRFM NAVNHLGLDA AVPKTIMQMM  540
NVEGLTRENV ASHLQKYRLK QMTAEEKAAM NAKSAMKKNE SHSTMDDSYY AGEGKELLNG  600
NVPNKRGASL KRPAGSETDI LEGTKKSKTE IEGTADYEAA PTEVNITATA NTTKDGPAAQ  660
EGKDSGESSD ERDAGNNSGG ENNSKHPPYH HSDTNEKEQQ EQELPKKQQR SKRGKSSSDD  720
EASDKDNFGQ QHRVVVGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-21506559154Transcription factor LUX
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822720.0FO082272.1 Bathycoccus prasinos genomic : Chromosome_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511919.10.0predicted protein
TrEMBLK8F1S40.0K8F1S4_9CHLO; Uncharacterized protein
STRINGXP_007511919.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.14e-23G2-like family protein