PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy07g03130
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 404aa    MW: 45595.4 Da    PI: 6.2393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy07g03130genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH352.3e-11211236126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yk  +C+++  tG+C yGd CkF H+
  Bathy07g03130 211 YKPDICKDYKDTGYCGYGDACKFVHD 236
                    899**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.35E-9207242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065210238IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-7210237IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-9211236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12211242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.0E-10298349IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.38E-4299342No hitNo description
SuperFamilySSF578502.01E-8299345No hitNo description
PfamPF146341.5E-6299343IPR001841Zinc finger, RING-type
SMARTSM001844.0E-5300342IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.114300343IPR001841Zinc finger, RING-type
PROSITE patternPS005180318327IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAEPGKPAEE DEEEKEEVVA VTFKKKSRAN VRKRKGTKGD DENDELAKKV NSSNVNADDD  60
NRERERREEE RNNNGKQYQS LLGGSSKASS SKIHEKRVFA YEGDRSVQIR DDGGATREIE  120
IDTARDRDGR ALREQKLKLA AERLKQNNEN NKDVMCGAVV EDDKVYRGTN AYTDYRAGFR  180
KEQTIANEKG GGAHGPARAS ANVRTTYVMD YKPDICKDYK DTGYCGYGDA CKFVHDRGDY  240
KQGWQLDKDW ERKLQEQKEK QAALEKMEKA LNSDGEEVDL NPDDDEEDDE TFDGDIPGEC  300
QMCSESWMDV RNPVVTKCKH YFCEACALRN DSAKKEKTCF TCEMPTGGTF NSAKDILKRV  360
KDMKRDGVKT WGKKKKEKKR GVMMGGGASQ QKNVDRSSGW ALG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M5e-48111367112324RING finger protein 113A
5z58_M5e-48111367112324RING finger protein 113A
6ff4_t5e-48111367112324RING finger protein 113A
6ff7_t5e-48111367112324RING finger protein 113A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822720.0FO082272.1 Bathycoccus prasinos genomic : Chromosome_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511934.10.0predicted protein
TrEMBLK8F1T80.0K8F1T8_9CHLO; Uncharacterized protein
STRINGXP_007511934.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP14831616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-79C3H family protein