PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy07g01410
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 510aa    MW: 55879.1 Da    PI: 5.1051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy07g01410genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49e-075177226
                   -S---SGGGGTS..--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartG..tCkyGdrCkFaHg 26
                    t++C+f+ ++    C yGd+C++ H+
  Bathy07g01410 51 TTSRCPFYKKGKqnSCTYGDKCRYDHC 77
                   5899******88**************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0181944IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1641945IPR000571Zinc finger, CCCH-type
PfamPF146080.00542542No hitNo description
PROSITE profilePS5010314.0514979IPR000571Zinc finger, CCCH-type
SMARTSM003560.864978IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-45177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.3E-11335443IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.16E-12350420No hitNo description
CDDcd001627.10E-7350413No hitNo description
PROSITE profilePS5008912.386351413IPR001841Zinc finger, RING-type
PfamPF000972.1E-8351412IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.7E-7351412IPR001841Zinc finger, RING-type
PROSITE patternPS005180376385IPR017907Zinc finger, RING-type, conserved site
SuperFamilySSF902297.85E-6441472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.023442469IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4442468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-7444470IPR000571Zinc finger, CCCH-type
PfamPF146080.26447467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MDPPNPPSSR AATNTKSSSS NTIACKFFLA GACAKPECKF SHDANDDQRP TTSRCPFYKK  60
GKQNSCTYGD KCRYDHCNDD NNNALGTIQT TTATARRENS SGGGGNLATT TRLMNTKAPS  120
FVPTFGTGGA AFLSQQMQRT NLSGGSQSTS SFTAASSLVV AGGGGGASGA WQNSPGEHLR  180
RSGEEAEEFG GDGGDDWGYE DEYGNWVSFN TGEGEDMADF VAAQLPDDDD LFLGMTASSG  240
DLQEYQQQQP PPQQQRQQLV AVGDGYGYYD QQGQWVNIED PQSQAFLEQQ YQLQQQQQQQ  300
QQYHHFQQQQ QQQQQRQVPR DVNAMFRPLE VGNASDQSYD QQRSFDAQIE CSICLERVAD  360
ESRPFSARRF GLLDKCDHSF CLSCIRGWRD GGVQGKEAGA IATEQARMCP ICRVNSFFIT  420
PSAHFPRTPE EKEEILKNYL SKMKQIPCKH YNNGRCPFGT SCFYSHGSGE VDTGVRKTTT  480
AGEELHILTT PTLADYLDVS KKVGGGGSR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822720.0FO082272.1 Bathycoccus prasinos genomic : Chromosome_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511970.10.0predicted protein
TrEMBLK8F1720.0K8F172_9CHLO; Uncharacterized protein
STRINGXP_007511970.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-35C3H family protein