PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy07g01100

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

SBP

Protein Properties

Length: 1107aa MW: 125064 Da PI: 9.8118

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy07g01100	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	25.2	4.4e-08	234	307	7	76
-----TT--H.HHHHTT--H...HHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 7 Ceadlseake.yhrrhkvCe...vhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 Ce++ ++ k +r++ C+ + ++ v g + fCqqC + h +ef+ + +sCr+ L+ h r k+ Bathy07g01100 234 CENEQKNEKGsKFRKYFCCDacvLRTSSTFVPSIGASVLFCQQCRKPHLKDEFEYGMKSCRESLNVHRIARLKR 307 4444444443133444444400055677778889999******************************9877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	11.28	226	307	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	0.001	234	294	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.5E-5	234	304	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-6	242	306	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1107 aa Download sequence Send to blast
MSSKTRSSNR FRKNNTNNDS DDDDKKNNER TALKDGFGQR SSRERTHPHR HHQHRAKKKM 60 KKNKSGERVE EEEDIEGENN VLVVQQEVAG LKKINKDDAS NSMTVLVRNP LFKRWTKDSI 120 AFDGRTFRVA NESMRKEIDE KKEKKEKEEI RPLEKEEEKE SQSKGVARRK ERNGEEESRI 180 IPSHEQQTLS PREQKRFKLE EQRKAYNASI NRGRKGRPRK GEMERNGAIL CKMCENEQKN 240 EKGSKFRKYF CCDACVLRTS STFVPSIGAS VLFCQQCRKP HLKDEFEYGM KSCRESLNVH 300 RIARLKRAGK YDLSEGRRTS NGDEKATAER SSTAGERSAR GCVATTRKKE EGGSFVCDSS 360 RDASEESLGE DIRKQQQNLD KEHVKSIGNA FRNERDQYTQ EIGKYGLEQA AFDKALVGGS 420 TYNPVAKLVI PDISPDIFSV FPPALTKSDR LVFHAMRKTA YEAEMEVRRS WELNQASEDG 480 VHVKVQNASP PDLHPDLVHF VRDALRMEPL AIGDGGEEAA QSPRARTTDG KDFPHDNNSN 540 DLLGTVRPGC VSFSFWVSDP QVLETEFAQS IFHSGDNSLF NRLRAAFVKG VRNSVQDEKT 600 KATVVVERGR NSVSVRHRNI EIMTKVEKMI GDATKPQVFH VSARSVLSGY VASIAIIGAN 660 LLGENSYLNI KFNDEVQEVC LDPEVNTTLE YSILERDQHM NVTPVMIRTY VRFNKSAFSS 720 RNKKNTSNGG VDTALLSSVA SLFQASSSKV KLATLQIVRD CNASEAEPIV VTTSKRIHRE 780 IHANFCSRED PQVMGTITRR AFLSCAKNCE DERVATGVVT KCTIDAMDAL NLRALANELR 840 RLDRERFYVS IQKALANVCD PYAEILLSGF LFASAHKFYR KVRKIASPEA CAKLRKKLFL 900 SHAPNIFFVA IMFLMYYSSV TRTSLYSKMR ERFLLAMRIH AMFYGWFSIH AATSVVFESA 960 NATVDSDTKH LKLVENFRCP QLERFSGFIV VVVTAAIISL MHSARPTWDV TVKILHTALQ 1020 VATAVCWQCT TGETIVMIVL VVSIQGILTV PMFWTQKRAW KGVWMAHPYQ IRTQKAREVF 1080 SVGGLANDAT GEKKNAAVTR NTKKAD*

Sequence ? help Back to Top

Protein Sequence Length: 1107 aa Download sequence Send to blast

MSSKTRSSNR FRKNNTNNDS DDDDKKNNER TALKDGFGQR SSRERTHPHR HHQHRAKKKM  60
KKNKSGERVE EEEDIEGENN VLVVQQEVAG LKKINKDDAS NSMTVLVRNP LFKRWTKDSI  120
AFDGRTFRVA NESMRKEIDE KKEKKEKEEI RPLEKEEEKE SQSKGVARRK ERNGEEESRI  180
IPSHEQQTLS PREQKRFKLE EQRKAYNASI NRGRKGRPRK GEMERNGAIL CKMCENEQKN  240
EKGSKFRKYF CCDACVLRTS STFVPSIGAS VLFCQQCRKP HLKDEFEYGM KSCRESLNVH  300
RIARLKRAGK YDLSEGRRTS NGDEKATAER SSTAGERSAR GCVATTRKKE EGGSFVCDSS  360
RDASEESLGE DIRKQQQNLD KEHVKSIGNA FRNERDQYTQ EIGKYGLEQA AFDKALVGGS  420
TYNPVAKLVI PDISPDIFSV FPPALTKSDR LVFHAMRKTA YEAEMEVRRS WELNQASEDG  480
VHVKVQNASP PDLHPDLVHF VRDALRMEPL AIGDGGEEAA QSPRARTTDG KDFPHDNNSN  540
DLLGTVRPGC VSFSFWVSDP QVLETEFAQS IFHSGDNSLF NRLRAAFVKG VRNSVQDEKT  600
KATVVVERGR NSVSVRHRNI EIMTKVEKMI GDATKPQVFH VSARSVLSGY VASIAIIGAN  660
LLGENSYLNI KFNDEVQEVC LDPEVNTTLE YSILERDQHM NVTPVMIRTY VRFNKSAFSS  720
RNKKNTSNGG VDTALLSSVA SLFQASSSKV KLATLQIVRD CNASEAEPIV VTTSKRIHRE  780
IHANFCSRED PQVMGTITRR AFLSCAKNCE DERVATGVVT KCTIDAMDAL NLRALANELR  840
RLDRERFYVS IQKALANVCD PYAEILLSGF LFASAHKFYR KVRKIASPEA CAKLRKKLFL  900
SHAPNIFFVA IMFLMYYSSV TRTSLYSKMR ERFLLAMRIH AMFYGWFSIH AATSVVFESA  960
NATVDSDTKH LKLVENFRCP QLERFSGFIV VVVTAAIISL MHSARPTWDV TVKILHTALQ  1020
VATAVCWQCT TGETIVMIVL VVSIQGILTV PMFWTQKRAW KGVWMAHPYQ IRTQKAREVF  1080
SVGGLANDAT GEKKNAAVTR NTKKAD*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082272	0.0	FO082272.1 Bathycoccus prasinos genomic : Chromosome_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007512328.1	0.0	unknown protein
TrEMBL	K8FEN5	0.0	K8FEN5_9CHLO; Uncharacterized protein
STRING	XP_007512328.1	0.0	(Bathycoccus prasinos)

Link Out ? help Back to Top
Entrez Gene	19014600