PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy06g02590
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 305aa    MW: 32430.1 Da    PI: 8.3071
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy06g02590genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.78.7e-15219251133
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                    C +Cg+ ++p+WRrgp  +++LCnaCG ++r++
  Bathy06g02590 219 CDHCGALDSPQWRRGPASKPCLCNACGTRFRRT 251
                    9***************88888**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.848213267IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-7213264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-11215268IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.19E-11216265No hitNo description
CDDcd002024.17E-11218258No hitNo description
PfamPF003202.1E-12219251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSVYPSLMQ TTTTTTETTT KRWYALVRLD EDGRSVAPQA EEIAKLEREL MRSQEVSTGG  60
GHVNSASISH HHHHHHHHVE TFLHTTYGSE GGGEGGRMMQ QQDENDITAT KVPSSRLGGG  120
KGGGGRQLQQ GANSDGTESA KEGSQSPSTT NETTNSSGKK RKKDTNGGGG VSSGKEKKKE  180
NATDTDTNNN NNNNRGGEES ARGTNARELP PGCKPGGPCD HCGALDSPQW RRGPASKPCL  240
CNACGTRFRR TNFLAPLSNN KDNNKQDNDE DSAVPTGNDN NKRNLDGGSN MASQTTKKRL  300
AAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124GGKGGGG
2158162KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822730.0FO082273.1 Bathycoccus prasinos genomic : Chromosome_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512592.10.0predicted protein
TrEMBLK8EGB10.0K8EGB1_9CHLO; Uncharacterized protein
STRINGXP_007512592.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-11GATA transcription factor 26