PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy06g02240
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 917aa    MW: 98983 Da    PI: 9.4651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy06g02240genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.1e-08808857248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                      ++W  +E + l+++v + Ggg W+ I + +g    ++Rt+ ++k++w+++l
    Bathy06g02240 808 NPWGLDEAQALIEGVSRCGGGKWADIKK-LGfpeiEHRTAVDLKDKWRNLL 857
                      68***********************966.5556999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.352802861IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-11804858IPR009057Homeodomain-like
SMARTSM007171.1E-5806859IPR001005SANT/Myb domain
PfamPF002492.2E-6808857IPR001005SANT/Myb domain
SuperFamilySSF466893.18E-14808866IPR009057Homeodomain-like
CDDcd116601.04E-18809858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MGANTTNKTT TSANENNNKY KSPTAPPAFN TSAPGRERFY NSIKFDSSGD LQRASEIDER  60
MIREKYDQDS ELVDLEREIL TGEDEEKKDA ALGSLAVRGG GAQPPSRLGN AAVGKMVTRT  120
EQREAKEMTG NNNNNNTINE NKNNKKDKEM MMEERNKESS GGKGGSNDAT AAAATEKQDS  180
GSNDDSNKLS ESNESKLLRS QQQRGVKNPS GSGGSGDGSD DNNTKNKINN LKTSGDEKMM  240
IIKENGTNEN AAEMNENDLL CDFGAEKQPM VVASPRKKSK TAYSSDLNRN CDGDTGGRYS  300
ELEDGRRQEG RNNKQKQEGD KNAKLVSNNN SKVNNNNNNS SNDNSNSSGR QGGRKQRNPV  360
RAPKRNDSSS GDDLIIPDEE ETKNANLLSE CDNLFVPPVA PLFKPPNHAG ASNAAMHKSA  420
SGNIDVNDGT NAKTFGANGK AMNTINTIDD SLYDQQFQIE PELLSARPGS DDSFRLFDPA  480
ATQGKSNEGS DEGEQLASGR GRRRRSSGRN TNNKSNSTRK TSGSDNSSYD EEADGSREKL  540
DNNAEESDSD IDISNDLSDE EVYEADYEDK ERLIDDLEDD LGENTNNHRV GRPLIIGSMG  600
RGSVGGEIMP GMLVNGRRAQ RGQPPKHEKV APSRAISGKK TNLKGASNTK GSTKSNNKSS  660
SSLATLTTMR PASNKSIRGD SKSKMKATGK MFDDLGEYTI AKVDEKKRSK QAGGSKSTAN  720
TNNKMVGKRN LSSAMARSGS ENAPNKRGRK NVDSDTKSLS SSGLSEGFQT SALGHAIGGT  780
NTKSTGTTAA RGREPNPQGG PRRSKHHNPW GLDEAQALIE GVSRCGGGKW ADIKKLGFPE  840
IEHRTAVDLK DKWRNLLRIA TLPTPSGRET AGKSGGDKKR EIPRAMLDRV RELAMLHAKN  900
KERELAAKAA QAQQRS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822730.0FO082273.1 Bathycoccus prasinos genomic : Chromosome_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512619.10.0predicted protein
TrEMBLK8EGU20.0K8EGU2_9CHLO; Uncharacterized protein
STRINGXP_007512619.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.19e-23TRF-like 6