PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy06g01570
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family Whirly
Protein Properties Length: 420aa    MW: 44678.8 Da    PI: 9.9951
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy06g01570genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly138.23.6e-432443841136
         Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvd.las.kes....ceffhdpaakgsneGkv 90 
                    s+yk+k+al+vk v+ptfe++  g++++kr+Gg+lle+a+++++rkydW +k+sf+ls+ e+ael++ l + ++s     effhdp+++gs +G v
  Bathy06g01570 244 SIYKSKSALSVKLVKPTFETDHQGRTIMKRSGGILLEFAPSIGTRKYDWTRKGSFMLSPIEAAELANrLNPsRQSiaqkVEFFHDPGMGGSSQGSV 339
                    79****************************************************************998752444222269*************** PP

         Whirly  91 rkalkvePlpdGs.GlfvnlsvtnslvkgnesfsvPvskaefavlrs 136
                     k+lk+e +pdG+ G+f+n + t+     + ++ +Pvs +e ++l  
  Bathy06g01570 340 TKSLKMEAMPDGTgGVFLNYNQTKF--GEKLNVNIPVSFGEVSALEL 384
                    *************99***9987776..33445799*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.0E-47232398IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.36E-27236411IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.9E-42245383IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0005739Cellular Componentmitochondrion
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSALSLRPLN RLYIFSLKSS SSSASSCSTR CGKNAKTTSS RFFSSFRSSS LLWGTRTTRT  60
ISSSGRFEIG KATKSASSFY SSSSSSENNN NNNYYYGGER EEKAQNQYKD AFASPPLVVS  120
NGDRLSGPGA NRAIKWVPSD AKSNAFGEEE ASYAASNNKD NYYARETPSA PPWGASGGGG  180
GLSSGQQQTQ TQTQNRGNNN YGGPGASYSS SSSYGGGGGG YNNNNNNNSS SSSSSSGRTF  240
VDFSIYKSKS ALSVKLVKPT FETDHQGRTI MKRSGGILLE FAPSIGTRKY DWTRKGSFML  300
SPIEAAELAN RLNPSRQSIA QKVEFFHDPG MGGSSQGSVT KSLKMEAMPD GTGGVFLNYN  360
QTKFGEKLNV NIPVSFGEVS ALELLIKHLV PRVMGFFEED SSTTSSSSTS SSSAAGYGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A1e-2523439633190p24: plant transcriptional regulator PBF-2
1l3a_B1e-2523439633190p24: plant transcriptional regulator PBF-2
1l3a_C1e-2523439633190p24: plant transcriptional regulator PBF-2
1l3a_D1e-2523439633190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822730.0FO082273.1 Bathycoccus prasinos genomic : Chromosome_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512599.10.0predicted protein
TrEMBLK8EGS30.0K8EGS3_9CHLO; Uncharacterized protein
STRINGXP_007512599.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.26e-21ssDNA-binding transcriptional regulator