PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy06g01090
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 343aa    MW: 39685.2 Da    PI: 9.0686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy06g01090genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-10174196325
                    S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                    + +C+f+ r G C+yGd+C+F H
  Bathy06g01090 174 EQPCKFWTRKGKCRYGDKCSFLH 196
                    679******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.708171199IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6171198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7174199IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-8174196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-8175198IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVFLPPPKPP PLAPPSFPDG YPLKSSKTTT TIQTTKKENK KNKKKSDDDE RGRKNTNDNG  60
EETNANETGG GIRGNELNAT TTTIQTTTTL LDEETMRWRN ERKKNYPRST NKTEEEAASA  120
KRKREEELER VLEEQRRLGS FEATVLLKEE EKEQKKNENE NNSKNNKSRT PRGEQPCKFW  180
TRKGKCRYGD KCSFLHEEAK RGVGKSSKND TNTNAKRHKC GGGEVPLLRR IFKNDIDRDN  240
SRLLQSIRFF VENIDDLRKY AVAQERSEEL NREYLKRLKM FSFVDDPVKR TKNSIVKKQV  300
IEKVEEEMLS SEEEEEKQEE EEAKENKQLD VGGFFSCYDS DK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101123RKKNYPRSTNKTEEEAASAKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822730.0FO082273.1 Bathycoccus prasinos genomic : Chromosome_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512483.10.0predicted protein
TrEMBLK8F6940.0K8F694_9CHLO; Uncharacterized protein
STRINGXP_007512483.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP578177