PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy05g04320
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 267aa    MW: 29141.1 Da    PI: 7.8666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy05g04320genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07136158326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + C  + r G+C +G++C+F+Hg
  Bathy05g04320 136 KPKCYAYER-GECTRGENCRFSHG 158
                    578******.*************8 PP
2zf-CCCH23.88e-08171191425
                    ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                    + C  ++r G+C +Gd+CkF+H
  Bathy05g04320 171 PVCYAHQR-GECTRGDSCKFSH 191
                    679999**.************* PP
3zf-CCCH22.42.2e-07219235926
                    GGGTS--TTTTT-SS-SS CS
        zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                    f++ G+C +Gd+C+FaH+
  Bathy05g04320 219 FLK-GECTRGDSCRFAHD 235
                    888.*************8 PP
4zf-CCCH17.47.9e-06247265625
                    -SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                    C  f++ G C +Gd C+F H
  Bathy05g04320 247 CYAFQE-GRCDRGDACRFQH 265
                    999***.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134514.6E-2086131IPR025306Probable zinc-binding domain
PROSITE profilePS5010314.671133160IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5135158IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5136158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835167194IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4167193IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-6171191IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019212236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493215237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5215236IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5218236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615241266IPR000571Zinc finger, CCCH-type
SMARTSM003565.9243266IPR000571Zinc finger, CCCH-type
PfamPF146083.1254265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSKEKKEKKE KKEKKEKKDS ESPTGSPSKE KKEKKEKKRK EPEPATIENT KEEDTKKDEE  60
DDDGDFKVHK KSDKQIVGGK VLDTFEDETL SCRDCAEDFV FTSGEQEFYA SKGWENKPTR  120
CEACKTAKKA RFGEDKPKCY AYERGECTRG ENCRFSHGSE PTYGGGGGGA PVCYAHQRGE  180
CTRGDSCKFS HEEGGGGGSR PPSRGGGGGG GGGGVCFAFL KGECTRGDSC RFAHDKNAAP  240
PKASGTCYAF QEGRCDRGDA CRFQHN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822740.0FO082274.1 Bathycoccus prasinos genomic : chromosome_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512988.10.0conserved hypothetical protein
TrEMBLK8EEU40.0K8EEU4_9CHLO; Uncharacterized protein
STRINGXP_007512988.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314