PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy05g04020
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family G2-like
Protein Properties Length: 1718aa    MW: 197265 Da    PI: 5.4306
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy05g04020genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.85.5e-0914791532254
        G2-like    2 prlrWtpeLHerFveaveqLGG.sekAtPktilelmkvkgLtlehvkSHLQkYR 54  
                     ++l+Wt  L ++  +a+e+L    ++  Pkt+ + m+v+ +t+++v+S LQ+ R
  Bathy05g04020 1479 QKLQWTDALKQKLYSALEELMRrYQRIGPKTVCDEMGVPEVTRDNVASYLQRVR 1532
                     89*****************964157899***********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541604.91E-10277347IPR016197Chromo domain-like
Gene3DG3DSA:2.40.50.402.4E-8278344No hitNo description
CDDcd000242.66E-5284344No hitNo description
SMARTSM002983.6E-6285346IPR000953Chromo/chromo shadow domain
PROSITE profilePS5001311.236286353IPR000953Chromo/chromo shadow domain
Gene3DG3DSA:2.40.50.406.8E-7353374No hitNo description
SuperFamilySSF541601.37E-7359392IPR016197Chromo domain-like
SMARTSM002980.043360461IPR000953Chromo/chromo shadow domain
Gene3DG3DSA:2.40.50.406.8E-7409461No hitNo description
PfamPF003852.4E-7409447IPR023780Chromo domain
SuperFamilySSF541601.37E-7419456IPR016197Chromo domain-like
CDDcd000244.57E-4421458No hitNo description
SuperFamilySSF525401.14E-44458733IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004877.6E-22500699IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3001.1E-20502683IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5119217.105516688IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF001761.0E-46523800IPR000330SNF2-related, N-terminal domain
CDDcd000461.96E-16523670No hitNo description
SuperFamilySSF525403.04E-60738994IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.3E-24829979IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000791.33E-25832956No hitNo description
PfamPF002714.3E-18835948IPR001650Helicase, C-terminal
PROSITE profilePS5119417.7048381020IPR001650Helicase, C-terminal
SMARTSM004901.7E-21864948IPR001650Helicase, C-terminal
SuperFamilySSF1014472.28E-614121419No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1014781533IPR009057Homeodomain-like
SuperFamilySSF1014472.28E-614781565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1718 aa     Download sequence    Send to blast
MSTASPSPPI YRARYRATNV VHYGESALSS SSDDDDEKDE DVPWRTRGRE DEKRENKKQN  60
TKKKKRTLQK KSAKEFETML LQSAEKEGGR LGPSEREKMK RKREKEEKQK MLLKYAKSNT  120
NGRGGNGGGG NGSVQAFDEE ENSDDDDEEY DAATRVSARE SRKRTKTGKS DVRGKKGKKR  180
QEDSSDSEPM AAIKRVKEVP QRSPPRYARR KAAPAVFKDI SSDDEAFFET SSEEEGESSE  240
EEDDDDGSDD SDDREGRIKK KNKNKKSSNK TKTKSDNMEE AMEEAYKIEK LLGCRKASSK  300
VGVSGEMEYL VKWSYYSYRD LEWMLASTLN SIGESSKVTA YKRKFGGAPS PDPDDLFPRE  360
YLEIERIFAT KESEEWVEYE EDDEGVKEED SEIQIIHDDN DDDNDDDEKE TKETTTKLEM  420
VRYYYCKWKS LNYSSATWEP MSRLTSEEDL KEIARFEAFS DPSPPDSSLM QKETAHLLKT  480
RHKFKDTTGS LDPTIPEFKN GMRLRDYQES SFRWMVTNFY KRKNVILGDE MGLGKTAQTI  540
AVLEYARRYK SKCRPSFCVV APLSTLTHWR REIEKWTDMN AIIFNGNVDD RDKCEKYEFW  600
LNKEAGEVKF DVLLISYENI LRHGNTALKD FAFEALVVDE GHRLKNIENA TTRSILSMKY  660
DWMLMLTGTP IQNNVKELFG LMHVLAPKSY PDWETFVDEF SLDPDNAASI NHQPTAEQVM  720
SIREALKPRM LRRLKDDVEK IPAKEEIVVR VELSAQQRGY YTAVAEKNIG VLLEGAKSKN  780
TPQLRNICME LRKVCNHPFL CDGLEDDYIQ RCRLALKEGE EMPSQLDLLT QSSGKMSFLG  840
KLLSKLKQDG SKVLIFSQFK RVLDILQDYL FLLNLPCERL DGDTAVQQRQ EGIDRFNDPE  900
QDSFAFLLST RAGGVGITLT AADTAIIFDS DWNPQNDLQA MARCHRIGQT KEVKVYRLVT  960
NGTYEYELFQ SASRKAALDE VLIGGGGGED MEEVEEEFGD GENQRANGGQ KTKKKKNEAE  1020
RITALLQKGL QFARMGENAN EESKKFEDED IDTILSKRAD VKAIGTKKGN AFSTFTFDAR  1080
EEEDKKKFGD DIDPAEYWKT MFPDAARKAE EEKKNRGFID ERLIVTGRRN RVNNFGDNLN  1140
LSLLEGGRTR GREERDVSYK PSKREGREQK GESKMCWTHR EIKIVYDSMF AYGCPYEDTR  1200
RAILSREVKE SIVASSGRSE QEIKAVARSL LGIFDVLRKD CSVTAQTLAN TDSLFTNAFP  1260
RFLGLFVDVK KAFENRRNRL VERKCLADLF EKTRTDEDYV WKPDELPTLK DEGEINDVSM  1320
LTAQTWYDDN SFYAPPSWSA KHDLALLRGS LEIGYSPWNA SKVNEQLEAI FHEKQIGSIC  1380
VDATVAHDAS RHSPSQYPPG LHPQLSSPPP PPPPPPPPPP PPPTTTTTTT TTPIELEEFK  1440
NFARTRLHFL LSRISGLKTT NTRNVHSSFG GTSNLGAAQK LQWTDALKQK LYSALEELMR  1500
RYQRIGPKTV CDEMGVPEVT RDNVASYLQR VRKDEVNQSD LSMRLWKYEK EIFPTAEHVE  1560
NYGKHTEHQL PATRPRRAEE GIKEVAKFQS ENLYAMELKH EHQRQYLLRA QNAEVQEKID  1620
AGISNEYLRR IQDVHRQIML RLIQQLDAEK EGFTKRCEAQ LKRLKKEKEE KKHLKEEEEK  1680
EHPKEEEEEV RRFGDDNEDE RRREHPEVIE LLSDDDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mwy_W1e-1184241060168761Chromo domain-containing protein 1
5o9g_W1e-1144241060307900Chromo domain-containing protein 1
6g0l_M1e-1144241060307900Chromo domain-containing protein 1
6g0l_W1e-1144241060307900Chromo domain-containing protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822740.0FO082274.1 Bathycoccus prasinos genomic : chromosome_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513154.10.0unnamed protein product
TrEMBLK8EF050.0K8EF05_9CHLO; Unnamed protein product
STRINGXP_007513154.10.0(Bathycoccus prasinos)