PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy05g03070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 22095 Da PI: 8.925 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.5 | 1.2e-06 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+ + +s L H+rtH Bathy05g03070 75 YECDVCEKVLRYPSKLAEHMRTH 97 99********************9 PP | |||||||
2 | zf-C2H2 | 27.3 | 8.7e-09 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s L++H+r H Bathy05g03070 103 YECDVCEKRFRHSSALQNHMRIH 125 99*******************99 PP | |||||||
3 | zf-C2H2 | 23.4 | 1.5e-07 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +L++H rtH Bathy05g03070 131 YECDVCEKRFRQSGSLTQHKRTH 153 99********************9 PP | |||||||
4 | zf-C2H2 | 24.4 | 7.5e-08 | 159 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+F+ +snL+rH rt H Bathy05g03070 159 YQCDVCEKRFRISSNLRRHVRTqH 182 9*********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.46E-19 | 73 | 125 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-14 | 74 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 9.2E-4 | 74 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0017 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.378 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3E-5 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 2.8E-6 | 103 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.456 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.3E-16 | 104 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.75E-24 | 112 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-18 | 123 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.6E-5 | 131 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.5E-4 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.332 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.6E-15 | 151 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.549 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.6E-4 | 159 | 182 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.1E-5 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 161 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MRKKNPHPQR AVNAKTVVVA SDREEREERL LKREEEERAL LRLRIPDDEE EEEDEQIREE 60 EMTPVRKGAK RKRAYECDVC EKVLRYPSKL AEHMRTHTKE KPYECDVCEK RFRHSSALQN 120 HMRIHTNEKP YECDVCEKRF RQSGSLTQHK RTHTNEKPYQ CDVCEKRFRI SSNLRRHVRT 180 QH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-27 | 73 | 180 | 20 | 188 | Aart |
2i13_B | 3e-27 | 73 | 180 | 20 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082274 | 0.0 | FO082274.1 Bathycoccus prasinos genomic : chromosome_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513247.1 | 1e-129 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P39413 | 4e-36 | AEF1_DROME; Adult enhancer factor 1 | ||||
Swissprot | Q49AA0 | 1e-34 | ZFP69_HUMAN; Zinc finger protein 69 homolog | ||||
TrEMBL | K8EWG7 | 1e-128 | K8EWG7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007513247.1 | 1e-129 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 1e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19015810 |