PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy04g03060

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 467aa MW: 52199.5 Da PI: 5.9009

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy04g03060	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	83	104	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y C +C k F + ++L++H + Bathy04g03060 83 YACFYCFKKFHSLDLLQKHAAK 104 89*****************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.725	83	112	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	107	IPR007087	Zinc finger, C2H2
SMART	SM00479	5.6E-4	191	395	IPR013520	Exonuclease, RNase T/DNA polymerase III
Gene3D	G3DSA:3.30.420.10	6.4E-26	192	391	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	7.01E-12	192	396	IPR012337	Ribonuclease H-like domain
Pfam	PF01612	1.7E-7	247	367	IPR002562	3'-5' exonuclease domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0090305	Biological Process	nucleic acid phosphodiester bond hydrolysis
GO:0003676	Molecular Function	nucleic acid binding
GO:0008408	Molecular Function	3'-5' exonuclease activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MASLANALND DDDDDDDDDE VLGGEKKSFS TRGRRRMVLS TIQREQLQRR GGNFKNFADA 60 AFKSQRSSGE TKKNNNNNKD LKYACFYCFK KFHSLDLLQK HAAKELHDEK HDVVCTNCRK 120 VCKTYFRLRE HLVGATASEA CKEAFEEKGG CRKCLRIPED AGGVHVCAFG SSTGSSSSVR 180 KKEGVCDECA PHVAIDCEMI ATTKSDETLA KVCVVNGLDE SVLMETVVTF CSKNGEEEGK 240 EDEKVKVLDY RTEITGLTAS DFETKLLPTL AEAREEVLAC LAGAHKNTPE MWKNKPHKLV 300 VHDARHDLRA LQITDEDVPN LFDRIRDTST YVPLQKEKGK RVKLKKLVEQ FLEADDADAD 360 DTLRNFQSPN APHSPHLDAL AALRLYRGCR DNCFHFQAVQ KGPLLRRKAS STTPSTTTPG 420 GGGEDEIEYF KTPKVLLENE EEKNDEKDTW LCCWCEDFAS GANTHE*

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MASLANALND DDDDDDDDDE VLGGEKKSFS TRGRRRMVLS TIQREQLQRR GGNFKNFADA  60
AFKSQRSSGE TKKNNNNNKD LKYACFYCFK KFHSLDLLQK HAAKELHDEK HDVVCTNCRK  120
VCKTYFRLRE HLVGATASEA CKEAFEEKGG CRKCLRIPED AGGVHVCAFG SSTGSSSSVR  180
KKEGVCDECA PHVAIDCEMI ATTKSDETLA KVCVVNGLDE SVLMETVVTF CSKNGEEEGK  240
EDEKVKVLDY RTEITGLTAS DFETKLLPTL AEAREEVLAC LAGAHKNTPE MWKNKPHKLV  300
VHDARHDLRA LQITDEDVPN LFDRIRDTST YVPLQKEKGK RVKLKKLVEQ FLEADDADAD  360
DTLRNFQSPN APHSPHLDAL AALRLYRGCR DNCFHFQAVQ KGPLLRRKAS STTPSTTTPG  420
GGGEDEIEYF KTPKVLLENE EEKNDEKDTW LCCWCEDFAS GANTHE*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082275	0.0	FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007513380.1	0.0	predicted protein
TrEMBL	K8ETZ4	0.0	K8ETZ4_9CHLO; Uncharacterized protein
STRING	XP_007513380.1	0.0	(Bathycoccus prasinos)

Link Out ? help Back to Top
Entrez Gene	19016332