PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy03g04690
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family HB-other
Protein Properties Length: 345aa    MW: 39490.8 Da    PI: 10.0983
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy03g04690genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.2e-08239288452
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
       Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrR 52 
                    +t++ ++ + +Le+  e  n+yp+ ++++ + + ++L+ +++ +WF+ +R
  Bathy03g04690 239 KTRLGASNVATLEKIWETgNHYPDDATIQGIRDATKLPASKIVNWFKEKR 288
                    6778888999*******99****************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576120No hitNo description
SMARTSM003890.075120180IPR001356Homeobox domain
PROSITE profilePS500719.183233294IPR001356Homeobox domain
SMARTSM003890.0034235298IPR001356Homeobox domain
SuperFamilySSF466894.28E-8236291IPR009057Homeodomain-like
CDDcd000860.00139238288No hitNo description
PfamPF000465.8E-6239288IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-8239300IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MALLMRRSCC FFSSSSSSSC SYSSSSSSFR RAKAVVVATV STTTSGGSFK SRFTSCRREN  60
HQPPRGNNFY IHNNTRINRR RPTRTFASHN DEEREDDEEE EEKWSDLLEQ FDKEAVVIAD  120
RNKKIIIPPH KVATLERALA GGRRTFRLNE LANDLGLERR DVTAWMKENQ HRQKELAEKY  180
PQEQFRNEDI DEDEVVGLLS NRAKETVRRD KLHDVKAPVN KGKKDGGPGG MPAYKGFKKT  240
RLGASNVATL EKIWETGNHY PDDATIQGIR DATKLPASKI VNWFKEKRDG ARSQRHRDAR  300
NRQAEKEGFE RGGRRREGRG GGEYGKQNHR KQRDVVEDWG DDYE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822760.0FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514130.10.0predicted protein
TrEMBLK8EC580.0K8EC58_9CHLO; Uncharacterized protein
STRINGXP_007514130.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP710966