PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy03g02390
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 838aa    MW: 93033.3 Da    PI: 10.1945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy03g02390genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-161543129
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGly 29
                   C++C+t +TplWR+gpdg+ktLCnaCG++
  Bathy03g02390 15 CAHCNTHTTPLWRNGPDGPKTLCNACGVR 43
                   ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-13962IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.112942IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-121050No hitNo description
Gene3DG3DSA:3.30.50.102.1E-131159IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.08E-121465No hitNo description
PfamPF003208.2E-141543IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401540IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MANTQSPTGI AGKRCAHCNT HTTPLWRNGP DGPKTLCNAC GVRDNRRQNK TRNVQQKPRV  60
KKEPRPEKAE KEIKKKGDGN RPKRGSADYK DGIENDTNTT PTKGNKKKVS QRELNARIQG  120
FNKDPFAKTE NIHVPQFGKA ETAQYYASMN DGKAYKPPQG YHKSDGGVVA ARFGPNTAAA  180
TYECDDQDLQ WLESQRDAFV AENMKEKKKT NTAMMKKKDQ KKQGEAEGGK QAEMKGKDGV  240
TQEHVEKLFD VFEEASWCAS SMVSSNSACD IVLGRCYSPS TEEDALHWTS DQPMHEAFLV  300
SPPHYKRNDK RHSLPNKYDT WGVIMNGGEN SNDATYDCVT LPQTPSTNDV TAGDGGLIGK  360
KMKTATTTTT HAKSKLNKSV INSGSENSSE CSDDEHLARL EKLSDINDSD VENVSGNGSS  420
NDLVVKRVTR SLNNTNSKSL TKVHLEGRAA SAKQSAAALK LRKARRAAEW VPSTVDVGAG  480
ELKTPIQQKT KKNNTNNNST KYKNNITNSD KKINTNSNAF DAFGGGGGGG SLKFGLTKRV  540
TRGSKSSLSS LAETEEVFDR ALLEKKMNLT VKVSQKNTSA KAFFSPGASI RPKPFVMKHD  600
ASMDKAFAEL RKRYPHAPSC EVVLTVHHYW YQKRMVHNNG RPLLSRFYWT PSKELRERPE  660
LATEAERDRY LFCFDAAAVK RQKAEKEERK NALMNSGGAL AQKRRRRRAC FNPAASKRRR  720
KAQAEMDFAT TQPLTICFEP LEDVLEYGLE YVEADDERYV ELMALAERSG TPKFNANKRA  780
SRSAAARANN EDSEKNTIVG SLMKKMFGWR GSTESDSLHR PETPKKRRTP RGGSARA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1701707QKRRRRR
2702707KRRRRR
3705720RRRACFNPAASKRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822760.0FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513999.10.0predicted protein
TrEMBLK8EC020.0K8EC02_9CHLO; Uncharacterized protein
STRINGXP_007513999.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP823833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.18e-13GATA transcription factor 19