PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy03g01880
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C3H
Protein Properties Length: 1074aa    MW: 116654 Da    PI: 5.4674
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy03g01880genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-1110441066527
                     --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    5 lCrffartGtCkyGdrCkFaHgp 27  
                      C f+ +tG CkyG++CkF+H+p
  Bathy03g01880 1044 DCEFYVKTGKCKYGETCKFNHPP 1066
                     5********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.140.10.108.1E-7187IPR027295Quinoprotein alcohol dehydrogenase-like domain
PfamPF133603.8E-649209IPR002372Pyrrolo-quinoline quinone repeat
SMARTSM005646.4E-45283IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SuperFamilySSF509984.32E-1256212IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.140.10.101.2E-14174337IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM005641.2E-5179211IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
SuperFamilySSF509981.88E-10179333IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
SMARTSM005641.5233264IPR018391Pyrrolo-quinoline quinone beta-propeller repeat
Gene3DG3DSA:3.30.200.202.0E-15493679No hitNo description
SMARTSM002204.5E-41565839IPR000719Protein kinase domain
PROSITE profilePS5001137.587565839IPR000719Protein kinase domain
PfamPF000698.6E-40569837IPR000719Protein kinase domain
SuperFamilySSF561121.75E-54570849IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.106.0E-42680837No hitNo description
PROSITE patternPS001080689701IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139234.827842977IPR010513KEN domain
CDDcd104221.79E-51843975No hitNo description
PfamPF064791.2E-38845975IPR010513KEN domain
SMARTSM005807.9E-15906963IPR018997PUB domain
Gene3DG3DSA:1.10.510.106.0E-429881021No hitNo description
SMARTSM003565.1E-610391066IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.79310391067IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-510431066IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-810441066IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-410451064IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0090501Biological ProcessRNA phosphodiester bond hydrolysis
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1074 aa     Download sequence    Send to blast
MRSMLSVLFC CFFLLLLSVV DVVVANESSS ATTNNNNDNN NKDSRGEGTE ISFSSKERLF  60
VATLDGSVSA VDSKTGQFLW SFETGSALVH ASSSSSSSSS AKAKASGEGG EEESGDGKGG  120
DIEGSASSSS VFPGLDGSLY VARRGVRGSS SAADIFSGGR KFSISRLPVT TRDLVEASPS  180
VTNDGAVIVG TRKTTVFAVD AESGEIVRTF DPETDDFEDE SSVRGNEDGE DGENGGRTIV  240
LLGRTDYAVK SIDAVTGKVR WNVTHGDLRP VGGGGGGEGV GYIGGSDTSS GDKLRIGANN  300
ALTRVDESGN IVWTTRTSSM PLSVINERGE NILGTTSDSG KSDEGSANKN NDSNEVTVGA  360
HAGGYFALPK GGEVGDPVVD GSSGALVVPK YGESSALTSF VVGDNPTEDD WACMPMELKS  420
IVEMQAEKGK IEQSLLPGGK VKDEENDTSF GSKVTFGQFS FIAMTGTLVV TASGTVLLKL  480
LLQRQKVAKS SESADDANTN GGEQQEQQQT ALTPSQKKKM KRKMKEQREK EMLEYAQNAN  540
ETRSIIGFPE DGESSRSAMK VGRLIVKPTV LGYGSCGTVV FDGELDGRSV AVKRLLAQFH  600
ELARKELAAL IASDEHPNIL RCFAMEEDKD FVYVALERCE TTLQARATET TKTSDSAPLL  660
DTSGFPTSDG VRILRDVAAG LKQLHSQGIV HRDLKPSNIL ITEKGRGKLA DMGVAKKVNL  720
IDGTSFETRA ILNNNNGGSA GGGGGDGTAG WQAPERLTNG RQSRAVDIFA LGCVVHFVLT  780
KGKHPFGEKF ERDSRVLRGD YNVSALNHLP EAKDLVRKCL EANPEDRPSA REVLRHPAWW  840
SREKRTQFLC DVSDRMELED REPGERILFK TLERASKFAI SNTDWRTKID PAMLENLEKY  900
RKYDGRSLRD LLRVIRNKSA HFRELPPRIQ RILGEPPDAF YAYFASRFPN LLLAVHEFAR  960
KSTPIVNDQI FLKYFGDEEQ LQEGNESWKD LKKLANDQKM KKESKSSSNT TTNNNNNTEN  1020
NNENDNDDWD LPPQNFPVRP NAIDCEFYVK TGKCKYGETC KFNHPPGLHY RRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G1e-10356497534446Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1516523KKKMKRKM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822760.0FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514000.10.0predicted protein
TrEMBLK8EBW90.0K8EBW9_9CHLO; Uncharacterized protein
STRINGXP_007514000.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.22e-21WRKY family protein