PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy03g00420

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

MYB

Protein Properties

Length: 750aa MW: 85027.9 Da PI: 9.618

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy03g00420	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.6	1.4e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Bathy03g00420 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWFEWL 53 78***************************.*********9986 PP
2	Myb_DNA-binding	31.6	3.9e-10	60	102	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ + Bathy03g00420 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYERL 102 68***************99.****8..*******9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.771	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-14	6	55	IPR001005	SANT/Myb domain
Pfam	PF13921	1.3E-12	10	70	No hit	No description
CDD	cd00167	6.03E-11	10	53	No hit	No description
SuperFamily	SSF46689	5.75E-21	33	109	IPR009057	Homeodomain-like
CDD	cd11659	7.82E-31	55	107	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-14	57	104	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-12	58	105	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.45	58	107	IPR017930	Myb domain
Pfam	PF11831	1.1E-23	389	620	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWF EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE RLLDAAVSKD EEYDPMDDPR 120 RLRPGEIDPN PEAKPARPDA IDMDEDEKEM LSEARARLAN TKGKKAKRKA REKRLDEARR 180 LASIQKNREM KAAGMGGRNT KRIVGIDYNA EIAFEKLAPK GPYDVSEEKQ LERKMIQDAK 240 FKSKTIHELD GKMIKEREEE MRTMDKLDEI AKKKNVPKAV KESNKQLDNF SAGRIRGKLN 300 LPKPSVSESE LERIAKLRKM GFAPDTTGIT TSNQLPGQET PMIQRKSRDE MVLEEARYLA 360 AMTATRSTLY GGETPSGFAD GAGKDFSGAT PSLQGGQRTN QRGHTNVVHG TPALQRPGTG 420 VVGQTPLRDD LQINDPDAVA EFMRPSDSAG SNQQLDHRRP LTSGIKSRFA SLPKPKNEFK 480 VQIPNIDELD ELEDDDAMEF DASGHRRAPV EIEEDEAERR ERLLEREEMV RHEMEKRRSQ 540 VYQRRNELPK PNVSKGYSAV VAETRKNLDE TQKLIDDEMI ELIKRDLNGI RPEDDPSFYC 600 LSNEQLAQAK AMLAAEAGDM PDSFAELFHK TREQIRESAR GKDVGTKKAE YQALYALMGT 660 ESKKAAKLER KVALLHEGYR TRSVALSKKL KTLHDELVGK KNTLRAFELL EAKESLGAPI 720 RVEKAMELAE AAREKEKVLQ EKYAAAVKK*

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWF EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE RLLDAAVSKD EEYDPMDDPR  120
RLRPGEIDPN PEAKPARPDA IDMDEDEKEM LSEARARLAN TKGKKAKRKA REKRLDEARR  180
LASIQKNREM KAAGMGGRNT KRIVGIDYNA EIAFEKLAPK GPYDVSEEKQ LERKMIQDAK  240
FKSKTIHELD GKMIKEREEE MRTMDKLDEI AKKKNVPKAV KESNKQLDNF SAGRIRGKLN  300
LPKPSVSESE LERIAKLRKM GFAPDTTGIT TSNQLPGQET PMIQRKSRDE MVLEEARYLA  360
AMTATRSTLY GGETPSGFAD GAGKDFSGAT PSLQGGQRTN QRGHTNVVHG TPALQRPGTG  420
VVGQTPLRDD LQINDPDAVA EFMRPSDSAG SNQQLDHRRP LTSGIKSRFA SLPKPKNEFK  480
VQIPNIDELD ELEDDDAMEF DASGHRRAPV EIEEDEAERR ERLLEREEMV RHEMEKRRSQ  540
VYQRRNELPK PNVSKGYSAV VAETRKNLDE TQKLIDDEMI ELIKRDLNGI RPEDDPSFYC  600
LSNEQLAQAK AMLAAEAGDM PDSFAELFHK TREQIRESAR GKDVGTKKAE YQALYALMGT  660
ESKKAAKLER KVALLHEGYR TRSVALSKKL KTLHDELVGK KNTLRAFELL EAKESLGAPI  720
RVEKAMELAE AAREKEKVLQ EKYAAAVKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
5xjc_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
5yzg_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
5z56_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
5z57_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
5z58_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
6ff4_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
6ff7_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
6icz_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
6id0_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
6id1_L	1e-147	2	744	3	789	Cell division cycle 5-like protein
6qdv_O	1e-147	2	744	3	789	Cell division cycle 5-like protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082276	0.0	FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007514374.1	0.0	predicted protein
Swissprot	P92948	1e-150	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	K8ECU5	0.0	K8ECU5_9CHLO; Uncharacterized protein
STRING	XP_007514374.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1040	16	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-144	cell division cycle 5

Link Out ? help Back to Top
Entrez Gene	19016580

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]