PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy02g05930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | MYB | ||||||||
Protein Properties | Length: 547aa MW: 59554.7 Da PI: 8.7042 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.5e-16 | 8 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 + +WT eEd ll + +++lGg+ +W++Ia++++ gR+ k+c++rw + Bathy02g05930 8 KSAWTIEEDTLLREQIQRLGGPgNWTAIAERLP-GRSSKSCRLRWCNQ 54 579******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd +++ a++ +G++ W+ I+r m+ gRt++q+k+r+++ Bathy02g05930 61 RGPFTPEEDAQILAAHAVHGNK-WAVISRSMP-GRTDNQVKNRFNST 105 89********************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.621 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.55E-27 | 7 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 8 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 10 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-11 | 10 | 53 | No hit | No description |
PROSITE profile | PS51294 | 25.57 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 7.6E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 61 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.74E-12 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 547 aa Download sequence Send to blast |
MEEEKNVKSA WTIEEDTLLR EQIQRLGGPG NWTAIAERLP GRSSKSCRLR WCNQLNPTVK 60 RGPFTPEEDA QILAAHAVHG NKWAVISRSM PGRTDNQVKN RFNSTLRRTL AQNGKAPPAS 120 SPPKKASSPV AAAQHLSSPM GSRKQSSNQL AKQANLKRVA SQILETMSCD ESMESSQDNK 180 DKRNNNNNNN MTNNTGKETT SKNAMKRPRK SPTKTKLGKS VRGPSRGPSQ DREDSGGSES 240 VGLETLIQAS LMELQRIKSG KSASGFEKEY YTMNNDQTSA HGGFGTSTNN NNNNNNNNNN 300 INNNNPTQNN ATMSNMSDRT MNDSRGMVSS MSMENLNRAA RGGFSMPGIP NDSYDWRANS 360 PVIGLPAFHS LNNQLVRRPS MLNIASQSVM VNNANPGGGG EQQQNANELN DPRAGTSALS 420 TPVTITPNLA SSWYGRMLEN LGWRNHFPLD VLPMQEQEDI HQKDAKEAHE KFQPIENGED 480 EECAPKEAAT AATTKTTAAT DAALIVKTEE DNVKTQDELP SPLSDNTMKN DMNGTTGTAV 540 NEAVAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 8 | 110 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082277 | 0.0 | FO082277.1 Bathycoccus prasinos genomic : Chromosome_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007514729.1 | 0.0 | predicted protein | ||||
TrEMBL | K8EB28 | 0.0 | K8EB28_9CHLO; Uncharacterized protein | ||||
STRING | XP_007514729.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 3e-39 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Entrez Gene | 19017708 |