PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g05930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 547aa    MW: 59554.7 Da    PI: 8.7042
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g05930genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.5e-16854147
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47
                     + +WT eEd ll + +++lGg+ +W++Ia++++ gR+ k+c++rw + 
    Bathy02g05930  8 KSAWTIEEDTLLREQIQRLGGPgNWTAIAERLP-GRSSKSCRLRWCNQ 54
                     579******************************.***********985 PP

2Myb_DNA-binding55.21.6e-1761105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEd +++ a++ +G++ W+ I+r m+ gRt++q+k+r+++ 
    Bathy02g05930  61 RGPFTPEEDAQILAAHAVHGNK-WAVISRSMP-GRTDNQVKNRFNST 105
                      89********************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.621155IPR017930Myb domain
SuperFamilySSF466891.55E-277102IPR009057Homeodomain-like
SMARTSM007178.3E-12757IPR001005SANT/Myb domain
PfamPF002491.3E-14854IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-231062IPR009057Homeodomain-like
CDDcd001671.66E-111053No hitNo description
PROSITE profilePS5129425.5756110IPR017930Myb domain
SMARTSM007177.6E-1760108IPR001005SANT/Myb domain
PfamPF002492.3E-1561104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2463110IPR009057Homeodomain-like
CDDcd001673.74E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEEEKNVKSA WTIEEDTLLR EQIQRLGGPG NWTAIAERLP GRSSKSCRLR WCNQLNPTVK  60
RGPFTPEEDA QILAAHAVHG NKWAVISRSM PGRTDNQVKN RFNSTLRRTL AQNGKAPPAS  120
SPPKKASSPV AAAQHLSSPM GSRKQSSNQL AKQANLKRVA SQILETMSCD ESMESSQDNK  180
DKRNNNNNNN MTNNTGKETT SKNAMKRPRK SPTKTKLGKS VRGPSRGPSQ DREDSGGSES  240
VGLETLIQAS LMELQRIKSG KSASGFEKEY YTMNNDQTSA HGGFGTSTNN NNNNNNNNNN  300
INNNNPTQNN ATMSNMSDRT MNDSRGMVSS MSMENLNRAA RGGFSMPGIP NDSYDWRANS  360
PVIGLPAFHS LNNQLVRRPS MLNIASQSVM VNNANPGGGG EQQQNANELN DPRAGTSALS  420
TPVTITPNLA SSWYGRMLEN LGWRNHFPLD VLPMQEQEDI HQKDAKEAHE KFQPIENGED  480
EECAPKEAAT AATTKTTAAT DAALIVKTEE DNVKTQDELP SPLSDNTMKN DMNGTTGTAV  540
NEAVAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-27811027128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514729.10.0predicted protein
TrEMBLK8EB280.0K8EB28_9CHLO; Uncharacterized protein
STRINGXP_007514729.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.13e-39myb domain protein 109