PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g05220
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 462aa    MW: 51107.5 Da    PI: 7.8674
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g05220genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.52.4e-15259292134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C+nC+ t++p WR++++g+ +LCnaCGly++k++
  Bathy02g05220 259 CVNCQCTDSPFWRKEKNGEGSLCNACGLYFAKNN 292
                    *******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011417.12253315IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-17253304IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.1E-14253304IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14255304No hitNo description
CDDcd002025.45E-13258304No hitNo description
PROSITE patternPS003440259284IPR000679Zinc finger, GATA-type
PfamPF003201.1E-12259291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSGGDAAGVE NTAHKPPPRT TPAGTNDAQK QQKQNTKKNN AGLPTAYRHN DMNDATSDAK  60
TFSATEQQQM HMQQQQQQQY AQAAVVQQYA QAYYYQMAMA QSMAGGPQMQ QRTPRASAGE  120
EHMQQMMMMQ QQQQQQQQQQ QQRQTGESNQ QQPGGGMFNM PNANSYMQMA MMNPQFAVAF  180
QQQQQQTSTA GGGAAFANGQ VGYNYPPGYY QQPQQYITPI KPNEMNNANA NKGSASGKTN  240
GTRTSRKRKT DAERAARVCV NCQCTDSPFW RKEKNGEGSL CNACGLYFAK NNAPRPVGLW  300
KRERNANTLV LKQQRLQQQQ ELAAQKLEQR NGERGAPSTS PNNHTSEEEG GYQQQQNDSG  360
SGRQNQKTAS NEAGSDGAKT ESVEKANQSG GNSSDENNEK KGGGSEENTD DDENENENKL  420
EWKRAKVVLE TTGERILVRV SESVERGGSN ERERERESEE K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249SRKRKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515017.10.0predicted protein
TrEMBLK8EBE90.0K8EBE9_9CHLO; Uncharacterized protein
STRINGXP_007515017.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-06GATA transcription factor 19