PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g03110
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 777aa    MW: 87938.2 Da    PI: 4.6808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g03110genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07512560247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      g WT+ E+e++ d  ++l+ g     W t +  ++ gR ++qc ++++++
    Bathy02g03110 512 GGWTPKEHEQFMDTLAKLPDGkanyEWGTFSISIP-GRVGYQCSNYYRSL 560
                      56*********************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1270.105.9E-485149IPR029048Heat shock protein 70kD, C-terminal domain
PROSITE profilePS500906.969506561IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-5510567IPR009057Homeodomain-like
SuperFamilySSF466892.39E-6512568IPR009057Homeodomain-like
SuperFamilySSF578504.41E-5692756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MPNNLLQDNT NNTTTNGLTL MKQTGGGVPS SETPPSAAFD TNVGATLENK DLNFENMCPP  60
DATAPMMRVE EEEVMMVPTT GEENKKEQLA EREVNATNAT NNTNNFMDDS DDELTEEQKR  120
VIAERIAALQ NRFKKFEEKS TENKIEELVM QHGHLNLNEK EAFMILKVCE MNELNAEERL  180
RRVDDLYQDA GESTEMYLLR ILDTETGQFL TQIREMVKEE EYAKQTLQKN KKMRTISEQR  240
IARKIKRLSN KKLFDEDGNE IVDSDLEAWE EYDNEQFFEE YVELPPKKEE KVDLGPMLGE  300
DGKEMVIGKD EALDGVKFVR HERKAPNGEN LEKGAHTTAR LKLDDAVARA NAVMEAQMKA  360
REEKRKAKEA KRLAKLAEEE AAKTKEESVK AEQKKEDVGM EETFLEPATA GEETKPVEET  420
TDATKALSSE AMDATVSGDD TVPPPPVSAA VDADANSDDD SDDDIEAPLE IDESELFAGW  480
SEARIKGWKN RIKKPNAYYY RFNAPGERQA NGGWTPKEHE QFMDTLAKLP DGKANYEWGT  540
FSISIPGRVG YQCSNYYRSL VKNGVVQDEN YMLDDKGELR FNFKNKGFDR TTIGTKPAKV  600
KPPPKPKKPK MRPPPKIKAP KMKKPKKEPK KKKKDQGDDD TKGDKTFRCS VKTGEIRRSS  660
RNSGKEKRKY SDGGEGEDNE DEDNEDDEDG DDEGPPVLPA GFLDPITRMQ IEEPAAISPY  720
GHVAGYETWC RILRNPEAPD TCPFTKQNLK RRQLVKLTHE NIAEYLDKMV DVQQMH*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514628.10.0predicted protein
TrEMBLK8F0260.0K8F026_9CHLO; Uncharacterized protein
STRINGXP_007514628.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP703433