PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g02410
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 556aa    MW: 61107.1 Da    PI: 10.3038
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g02410genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.2e-08254306348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      +W+  E + lv +vk+ G g+W+ I +          + R++ ++k++w++++
    Bathy02g02410 254 PWSLVEVKALVAGVKRCGRGQWADIKSLSDekisgalLQRSAVDLKDKWRNVM 306
                      8*************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.768247310IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11247309IPR009057Homeodomain-like
SuperFamilySSF466894.52E-12250312IPR009057Homeodomain-like
SMARTSM007171.0E-4251308IPR001005SANT/Myb domain
CDDcd116602.23E-15253307No hitNo description
PROSITE profilePS5129410.407427495IPR017930Myb domain
SMARTSM007171.9E-6431493IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-11433492IPR009057Homeodomain-like
PfamPF002493.9E-6433491IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-11434517IPR009057Homeodomain-like
CDDcd116601.40E-15434491No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MPSTAAQAGM MMMMMPPPPP LNLKQEAEDE KGQNSERSGF DSFQEEPCED REDMEQSKRT  60
NNDNNNSNNA KKRSRPAVGE NIKRPETPFM NSPSAAADVL MSLCGDGDGG GLFAAPAANF  120
KPVNANATSR QQKSRRNSNA ETTCTGQIFP LNLKCPRRKR TSLCKNMRRS SSGSSLEDIG  180
GESGAVVLHG ISTTTATTTG NNGENTAPST NTATIPRVNN NKATTEEQQN QRKHQRNSSG  240
ITNGKNKRQK VHRPWSLVEV KALVAGVKRC GRGQWADIKS LSDEKISGAL LQRSAVDLKD  300
KWRNVMRTAL SPVLYKKREA TEIPENMLED IRSLATAKEK ETLATNNAME AKLTNTTHTA  360
ANTSPSTSGD GNDSNSNEDG EDDAFVTDNN AESSQQKNTA LVERNTVTVS KSDVKQQQHA  420
PYVQGQRRSK HHSPWTLEES QALVDGVRTC GGCRWTAIKK RDEADAIEKK TLKKLGRRTA  480
MDLKDKWRNL LQLANLPTQS RRKRETPMSL LADVLELEKK FGDTRRRGRR TVATNNNTKK  540
SSSQEQSVAT IVPTN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514546.10.0predicted protein
TrEMBLK8EAK60.0K8EAK6_9CHLO; Uncharacterized protein
STRINGXP_007514546.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-13TRF-like 6