PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g01480
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 630aa    MW: 71993 Da    PI: 10.2609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g01480genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-1460101245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++WT++Ed++l +  +++G++ W+t+a+ ++ gRt+ qc  rw+
    Bathy02g01480  60 QPWTKQEDLKLQHMQEKYGNK-WATVASQLP-GRTGQQCAQRWR 101
                      89*******************.*********.***********8 PP
2Myb_DNA-binding26.71.3e-082332681148
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +l+++  ++G + W+ Iar +  gRt+ qc  rw+ +l
    Bathy02g01480 233 QLAKLYDEHGQR-WAIIARSLS-GRTDQQCMGRWRRHL 268
                      6999******99.*********.************986 PP
3Myb_DNA-binding46.11.1e-14274319148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+W +eEde+l +a++ +G + W+  ar +  gRt+ qc+ r+++++
    Bathy02g01480 274 RGNWKKEEDEQLRKAFETHGAR-WAFLARDIE-GRTAQQCRARFYQLR 319
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.60554108IPR017930Myb domain
SuperFamilySSF466894.79E-1857119IPR009057Homeodomain-like
SMARTSM007171.8E-1458106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2160122IPR009057Homeodomain-like
CDDcd001671.90E-1061101No hitNo description
PfamPF139211.6E-1662121No hitNo description
PROSITE profilePS500904.565105122IPR017877Myb-like domain
SMARTSM007177.0E-6109270IPR001005SANT/Myb domain
PfamPF139212.4E-14233285No hitNo description
CDDcd001674.82E-5233268No hitNo description
Gene3DG3DSA:1.10.10.605.2E-14233274IPR009057Homeodomain-like
PROSITE profilePS500907.793234268IPR017877Myb-like domain
SuperFamilySSF466891.76E-21248324IPR009057Homeodomain-like
PROSITE profilePS5129417.598269323IPR017930Myb domain
SMARTSM007173.2E-12273321IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-15275318IPR009057Homeodomain-like
CDDcd001671.04E-9276318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MAPWGKQRDS ETNKNASSES LSTTPNDDVN DDEQHERTKM NEQNQRSHSV AKAEMGEKTQ  60
PWTKQEDLKL QHMQEKYGNK WATVASQLPG RTGQQCAQRW RHRVNPNIRR EKWTKEEDEK  120
VILMMFVLSF SRFKNHRHLS RESREIRRFE RRKRETSLSS TSERSRGVET SYFEIESTGG  180
TENAIWAFVT FFNQKFDFFF FFLRSNLSAF ADKNSPYFSL SRTNNTTHTC VTQLAKLYDE  240
HGQRWAIIAR SLSGRTDQQC MGRWRRHLDP SVERGNWKKE EDEQLRKAFE THGARWAFLA  300
RDIEGRTAQQ CRARFYQLRQ IEEEREEEEE EKKKKKKKKR QTFSDEEEEK KEEDGAKKDE  360
EDEKKRKKRK TSGKENANTN SNNKNGSKSS ATKIVTVAKG SLAEAFPPIT ASMEQISLRE  420
ENDAAKKGSL EPTQFDQVAA MSESADNATA MTTPVKKKNP VTTGTEDGAE INENHHRFFA  480
LKDPSKSVSA PSTPEEKAEK SPPARSSRST KKTTPTLPSV TTKKRGKLSS TTPTNTGSNN  540
NKGSNKSKTK PKTSRRTPEK LNGEGGQRRR KTSIIKKDAF RGIEDDTLTL LCAAADRLES  600
LFPPAELGGS DGAKKEEENL KAFYRDSAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-146131616143MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-146131616143MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331339KKKKKKKKR
2363367KKRKK
3363369KKRKKRK
4566571QRRRKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514971.10.0predicted protein
TrEMBLK8EBH40.0K8EBH4_9CHLO; Uncharacterized protein
STRINGXP_007514971.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.23e-15myb domain protein 3r-3