PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy02g01020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 144aa MW: 17013.2 Da PI: 7.5373 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.9 | 2.2e-07 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s L H+rtH Bathy02g01020 92 HECDFCEKVFRYPSKLAEHMRTH 114 78********************9 PP | |||||||
2 | zf-C2H2 | 26.7 | 1.4e-08 | 120 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C k+F nL+rH+rt H Bathy02g01020 120 YECEVCEKRFALAGNLERHMRTqH 143 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.0E-17 | 91 | 141 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.0E-14 | 92 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 6.7E-4 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.752 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.0E-5 | 92 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3E-4 | 120 | 143 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 8.2E-6 | 120 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.362 | 120 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-10 | 121 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 122 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MRRKNPHPKR AVNARTVLKG EKEEPLVLCS RIPDEEADLE ANHHQIQKEE EEEGEDDDVE 60 RLRRIMCVPR DDVVEQNQTR KDAKGVKRKR GHECDFCEKV FRYPSKLAEH MRTHTKEKPY 120 ECEVCEKRFA LAGNLERHMR TQH* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082277 | 0.0 | FO082277.1 Bathycoccus prasinos genomic : Chromosome_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007514689.1 | 1e-101 | EGL-43 | ||||
TrEMBL | K8EB03 | 2e-99 | K8EB03_9CHLO; EGL-43 | ||||
STRING | XP_007514689.1 | 1e-100 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Link Out ? help Back to Top | |
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Entrez Gene | 19017216 |