PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy02g00780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | MYB | ||||||||
Protein Properties | Length: 489aa MW: 57949.8 Da PI: 9.6013 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.9 | 3.1e-10 | 266 | 307 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W+ eE +l+ +v ++G+ W+ I +++g R + +c++++++ Bathy02g00780 266 EWSDEEKVRLKSLVDRYGNTAWNEIGKRLG--RDGQNCRDKYRS 307 7****************************8..**********96 PP | |||||||
2 | Myb_DNA-binding | 24.4 | 7e-08 | 321 | 388 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT....................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....................tWktIartmgkgRtlkqcksrwqkyl 48 +gr++ eE ++ + +++ + +W+ +a+++g +R++k+c +w ++l Bathy02g00780 321 KGRFSDEERAKFRKIMEEYYEEhgielgnpedgkhgefldniSWTVVAKKLGGNRSEKSCFTHWKNVL 388 7999****999999988888888888***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.6 | 172 | 252 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.21 | 176 | 254 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.86E-11 | 232 | 312 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.856 | 259 | 313 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-9 | 260 | 309 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-6 | 263 | 311 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-4 | 266 | 306 | No hit | No description |
Pfam | PF13921 | 1.2E-10 | 267 | 329 | No hit | No description |
PROSITE profile | PS50090 | 7.84 | 316 | 388 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-9 | 318 | 388 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.46E-5 | 319 | 390 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-10 | 320 | 390 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MGDLKAVFSS LLGKESAKKV RKDKDKDKKK DKRKREKKEK KKKKKEKGKD KTKEKIGRRI 60 EKKKKKKEVE EEEEEEPEEN QRNGRAQQEL PLQQVDGYEI YEEEEEEEEE EVQEHRGQSV 120 PRKRKKKEIL KPRADKSRKK PKENNDDDDD DDVQVAGEQE GRKNWKWNAH NLEGQKYGQW 180 SETEQEALTN ALETWCRSNR CLDKFNRKDY SFLLRERNQS RRELDKTIYY EISAEVNTRN 240 PQQCYERIRR TLIRSAKGAD ELRNKEWSDE EKVRLKSLVD RYGNTAWNEI GKRLGRDGQN 300 CRDKYRSTFD IFDENRGEVK KGRFSDEERA KFRKIMEEYY EEHGIELGNP EDGKHGEFLD 360 NISWTVVAKK LGGNRSEKSC FTHWKNVLAA GEKGDFMVEN GAWGGYDDDA SLLEQVKEQC 420 ISDEMNEVDV DFSLITVPGR SQTQIVRRWK FLKQRTDTRK VKALSKKIEK YEAKVVKERR 480 KEARRRVS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 44 | KKKDKRKREKKEKKKKKK |
2 | 36 | 44 | KKEKKKKKK |
3 | 42 | 64 | KKKEKGKDKTKEKIGRRIEKKKK |
4 | 121 | 125 | RKRKK |
5 | 121 | 127 | RKRKKKE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082277 | 0.0 | FO082277.1 Bathycoccus prasinos genomic : Chromosome_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007514795.1 | 0.0 | predicted protein | ||||
TrEMBL | K8ERK1 | 0.0 | K8ERK1_9CHLO; Uncharacterized protein | ||||
STRING | XP_007514795.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2327 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 4e-07 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Entrez Gene | 19017192 |