PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy01g07040

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 548aa MW: 62963.8 Da PI: 4.8183

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy01g07040	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00059	457	481	2	23
EETTTT..EEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCg..ksFsrksnLkrHirt.H 23 C C+ ++F+++++L++H + H Bathy01g07040 457 ACRSCNpiRCFKSRYDLRKHEESkH 481 6*******************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.87E-6	398	451	No hit	No description
SMART	SM00355	0.36	399	422	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	401	422	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.076	429	456	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.09	429	451	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	431	452	IPR007087	Zinc finger, C2H2
SMART	SM00355	6	456	481	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MMEEESLGPP SPPPPPPPAS SSEKEEARDG TTTTVRVVSV CVREEEEEEE EEVENGDDVD 60 DAGEEDVNNE NKNNEDDKSE KKWLEKAKDG WRTMREKKRE KREEIEKMIA DVSGSGAKEE 120 EEEEEEEEED EDEDEKENDS MMVSMMNAEN NSNSNKKSSN KKRVKLRTQT AAYKVTRKIR 180 SATERIRMIG SLCEKWERRL LSVVVGAGDE ESENDDAGNK TVELEELEDL CVSLVSILNE 240 SVGKLRAYVK ESREKVLPNG SVGKKEDELE KVEQKEAKEQ LREKAGFKII ARCLERSETL 300 EKRVIQSMAK LNAKNKELVR VRGDDSRIPS SEIKSKAALV VDAFTLYLKS EEQHLKNENE 360 RAARLKREQT VATKKKENKT KEDPTPVNLS SLDASTEVFK CLKCDLAFQS FASRNTHMEV 420 KHFDGAKMFF CNKCDGTYTS RTSLHRHVNK HHSQKWACRS CNPIRCFKSR YDLRKHEESK 480 HYEEMKKRRR ELGEEEEEEE GDDDTTPKKS SKDMKTAKKS KKETLDETFY TFVNGFFLES 540 SDEDEDE*

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MMEEESLGPP SPPPPPPPAS SSEKEEARDG TTTTVRVVSV CVREEEEEEE EEVENGDDVD  60
DAGEEDVNNE NKNNEDDKSE KKWLEKAKDG WRTMREKKRE KREEIEKMIA DVSGSGAKEE  120
EEEEEEEEED EDEDEKENDS MMVSMMNAEN NSNSNKKSSN KKRVKLRTQT AAYKVTRKIR  180
SATERIRMIG SLCEKWERRL LSVVVGAGDE ESENDDAGNK TVELEELEDL CVSLVSILNE  240
SVGKLRAYVK ESREKVLPNG SVGKKEDELE KVEQKEAKEQ LREKAGFKII ARCLERSETL  300
EKRVIQSMAK LNAKNKELVR VRGDDSRIPS SEIKSKAALV VDAFTLYLKS EEQHLKNENE  360
RAARLKREQT VATKKKENKT KEDPTPVNLS SLDASTEVFK CLKCDLAFQS FASRNTHMEV  420
KHFDGAKMFF CNKCDGTYTS RTSLHRHVNK HHSQKWACRS CNPIRCFKSR YDLRKHEESK  480
HYEEMKKRRR ELGEEEEEEE GDDDTTPKKS SKDMKTAKKS KKETLDETFY TFVNGFFLES  540
SDEDEDE*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082278	0.0	FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007515390.1	0.0	mCG118030, isoform CRA_a
TrEMBL	K8E9G8	0.0	K8E9G8_9CHLO; MCG118030, isoform CRA_a
STRING	XP_007515390.1	0.0	(Bathycoccus prasinos)

Link Out ? help Back to Top
Entrez Gene	19018438