PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy01g06780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 28265 Da PI: 8.7209 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 26.7 | 1.4e-08 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s+L+rH+rtH Bathy01g06780 102 HECDVCEKVFRYPSQLTRHMRTH 124 78********************9 PP | |||||||
2 | zf-C2H2 | 24.1 | 9.4e-08 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C k+F+++ +L++H+r H Bathy01g06780 130 YKCDVCWKCFRQSGHLQTHMRIH 152 9********************99 PP | |||||||
3 | zf-C2H2 | 28.9 | 2.7e-09 | 158 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ nLkrH+r H Bathy01g06780 158 YECDFCDKAFRDSGNLKRHMRIH 180 99*******************99 PP | |||||||
4 | zf-C2H2 | 18.2 | 6.7e-06 | 186 | 208 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C +F+++ +L++H H Bathy01g06780 186 YECDVCEWRFRHSGHLRSHKLIH 208 99*****************9988 PP | |||||||
5 | zf-C2H2 | 19.4 | 2.9e-06 | 214 | 237 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+F+r+ +LkrH r+ H Bathy01g06780 214 YECDLCEKRFRRSNTLKRHKRLcH 237 99*******************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 15.604 | 102 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7E-4 | 102 | 124 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.93E-18 | 102 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-16 | 102 | 130 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 7.6E-7 | 102 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 104 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3E-4 | 130 | 152 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.999 | 130 | 157 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 9.4E-6 | 130 | 152 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-15 | 131 | 149 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 132 | 152 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.19E-23 | 139 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-20 | 150 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 8.5E-6 | 158 | 180 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.727 | 158 | 185 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 3.4E-7 | 158 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 160 | 180 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-17 | 178 | 205 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.74E-18 | 180 | 232 | No hit | No description |
SMART | SM00355 | 0.0078 | 186 | 208 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.711 | 186 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 188 | 208 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.5E-13 | 206 | 234 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0067 | 214 | 233 | No hit | No description |
SMART | SM00355 | 0.0095 | 214 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.882 | 214 | 237 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 216 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MRTVGVNLLL PSKVSRTSTY TTARRRKSPH PKRAVNARRT VLKVSREEEE PNLVLCLRIP 60 DDEEDGLEAN QNQIQKEDEE EGVEEGEEEI TVREGAKRKI GHECDVCEKV FRYPSQLTRH 120 MRTHTNEKPY KCDVCWKCFR QSGHLQTHMR IHTNEKPYEC DFCDKAFRDS GNLKRHMRIH 180 TNERPYECDV CEWRFRHSGH LRSHKLIHTG EKPYECDLCE KRFRRSNTLK RHKRLCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 5e-36 | 102 | 234 | 15 | 188 | Aart |
2i13_B | 5e-36 | 102 | 234 | 15 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082278 | 0.0 | FO082278.1 Bathycoccus prasinos genomic : Chromosome_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007515256.1 | 1e-176 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P10073 | 9e-43 | ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22 | ||||
TrEMBL | K8ENW4 | 1e-175 | K8ENW4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007515256.1 | 1e-175 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 6e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19018413 |