PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy01g06670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 21562.4 Da PI: 8.9127 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 26.4 | 1.6e-08 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s+L +H+rtH Bathy01g06670 71 HECDVCEKVFRYPSYLAKHMRTH 93 78********************9 PP | |||||||
2 | zf-C2H2 | 17.7 | 1e-05 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C k+F+ + Lk H r H Bathy01g06670 99 YKCDVCEKRFRYSNGLKYHTRIH 121 9********************99 PP | |||||||
3 | zf-C2H2 | 28.8 | 2.9e-09 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++s+L++H+r H Bathy01g06670 127 YECDFCDKAFRDSSSLTKHMRIH 149 99*******************99 PP | |||||||
4 | zf-C2H2 | 19.6 | 2.5e-06 | 155 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC C k+++ +L+ H+rt H Bathy01g06670 155 YKCDVCEKRYRYAQSLRYHMRTqH 178 9*********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.87E-18 | 70 | 121 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-15 | 71 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 6.9E-4 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.981 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.8E-6 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0033 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.563 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-15 | 101 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.23E-23 | 108 | 164 | No hit | No description |
Pfam | PF13465 | 2.5E-10 | 113 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.9E-18 | 121 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 16.976 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.2E-5 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.9E-15 | 147 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 155 | 178 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.5E-6 | 155 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.5E-4 | 155 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 157 | 178 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGRRKNPHPK RAVNARTVLK GEKEEPLVLC SRIPDEDDDF EANHHQIQKE EEEEEEEEIT 60 VRKGAKRKRG HECDVCEKVF RYPSYLAKHM RTHTKEKPYK CDVCEKRFRY SNGLKYHTRI 120 HTNEKPYECD FCDKAFRDSS SLTKHMRIHT NEKPYKCDVC EKRYRYAQSL RYHMRTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5v3j_E | 1e-25 | 59 | 176 | 5 | 284 | Zinc finger protein 568 |
5v3j_F | 1e-25 | 59 | 176 | 5 | 284 | Zinc finger protein 568 |
5v3m_C | 1e-25 | 59 | 176 | 5 | 310 | Zinc finger protein 568 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082278 | 0.0 | FO082278.1 Bathycoccus prasinos genomic : Chromosome_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007515587.1 | 1e-129 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P39413 | 1e-33 | AEF1_DROME; Adult enhancer factor 1 | ||||
Swissprot | Q9UJL9 | 5e-33 | ZF69B_HUMAN; Zinc finger protein 69 homolog B | ||||
TrEMBL | K8E9V5 | 1e-128 | K8E9V5_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007515587.1 | 1e-129 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 2e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19018402 |