PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g06140
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 956aa    MW: 107773 Da    PI: 9.8122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g06140genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-0581103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+  ++s+L  H+r H
  Bathy01g06140  81 HECDVCEKVLVSSSLLAIHMRIH 103
                    78*******************99 PP
2zf-C2H220.21.6e-06109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F++  +Lk H r H
  Bathy01g06140 109 YECDVCEKRFRQAGHLKIHVRIH 131
                    99*******************99 PP
3zf-C2H219.82.1e-06137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C k+F+++ +Lk H r H
  Bathy01g06140 137 YECHVCEKRFRQSGTLKIHKRIH 159
                    99*******************99 PP
4zf-C2H212.30.00051165181117
                    EEETTTTEEESSHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                    y+C+ C k+F+++ +Lk
  Bathy01g06140 165 YECHVCEKRFRQSGSLK 181
                    99***********9997 PP
5zf-C2H211.50.00091193212120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C k++++  +Lk H 
  Bathy01g06140 193 FECHVCEKRYRHANSLKYHV 212
                    89*****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-1780131No hitNo description
Gene3DG3DSA:3.30.160.602.3E-1380110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02281103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.46481108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SMARTSM003552.5E-4109131IPR015880Zinc finger, C2H2-like
PfamPF128740.049109130No hitNo description
PROSITE profilePS5015715.791109136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-16111130IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-20118174No hitNo description
Gene3DG3DSA:3.30.160.608.3E-16131162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.75137164IPR007087Zinc finger, C2H2
SMARTSM003550.0025137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576676.92E-16159211No hitNo description
Gene3DG3DSA:3.30.160.604.7E-14163187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035515165187IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.212165192IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-8188220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.7193218IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827193223IPR007087Zinc finger, C2H2
SMARTSM003200.18627668IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.6E-32629955IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029413.554634871IPR017986WD40-repeat-containing domain
SuperFamilySSF509786.41E-37639955IPR017986WD40-repeat-containing domain
SMARTSM0032031675718IPR001680WD40 repeat
SMARTSM00320370723762IPR001680WD40 repeat
SMARTSM0032022767811IPR001680WD40 repeat
SMARTSM003203.3E-5824862IPR001680WD40 repeat
PROSITE profilePS500829.84830862IPR001680WD40 repeat
SMARTSM00320130916955IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MRRKNPHPQR AVNARTVLKV SYLDARDKEE EEEEVEEEEE QPTPVLCLKI PDEDDVVFEV  60
EQKEIRKETT TTKRGKRKRE HECDVCEKVL VSSSLLAIHM RIHTNEKPYE CDVCEKRFRQ  120
AGHLKIHVRI HTNEKPYECH VCEKRFRQSG TLKIHKRIHT NEKPYECHVC EKRFRQSGSL  180
KIYKRIHTNE KPFECHVCEK RYRHANSLKY HVVYTRTHTS TAKYLVSHKT KKRLLLCENF  240
SKSAQKKFSK ELLTILKEIE KMTASSGRRR SSRVVASSSA AAVPSRRRPP PVLAASSTKV  300
LKKAKTTIGK KKSTVAQKVT SSLDSIQTPN IPSGGRKNNN KKRNYHLDND SSLRSSPTST  360
IETTTNTGGG RRLSAAHVLK DDDDDFENDY SKKETKTNKK ARKTKEEETT SDKKKEEEDQ  420
GSIITDEKNE GGRELFLTAY EKEREIRLQK NRARMEALNI RQLASEMMTT TERQQRGTTG  480
PSQRGLRKKE KKAKEPVVLR RSGRRTGGVA ELAGGIDQER RDGSIVLADG RMITQGSGGL  540
ETREEEKKKG AGEAILSLTV TANEKTKTVK VELSSKFISK CESTKGDDES DAKFIEYLHR  600
TTRGIKTTKT KTNTTSLKSL LSAKTLDLKE DDVAKCTERA VTHADFHPST SEIILASGDK  660
DGNVSLWRVD DEDEDTHGVY CFKPHSQYVS HVKFGNGNGI IGSNLLSCAY DGHVWMLDSE  720
RGEFWELFSG AEHDIEFASM ETNVDGNVIY GGDNDGMLNL IDLRASTKKL AAQFALGEKR  780
INTVSFNTND LFSIATSSAM RKGGGEICVW DLRKVCGISS STKQQKPVHQ LLHKKSTQSA  840
YWNPDGKRLL TTCYDDCVRV WNPSVSSSKP EVSIRHNTQT GRWVLPFRAK WVGDDGIAVG  900
SMKREVEIFD AQSGKRGLRL HSPELMTAIP SRVAVHPTAN IVAGCTSSGR CHIYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-29792244188Aart
2i13_B3e-29792244188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515393.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8E9970.0K8E997_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007515393.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.16e-08C2H2 family protein