PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g05740
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family AP2
Protein Properties Length: 667aa    MW: 74662.5 Da    PI: 5.4208
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g05740genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.57e-13354403155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV+ + ++grW+A+I+        k+++lg f+ +e+Aa a++ a+ k +g
  Bathy01g05740 354 SKFRGVTHHCRTGRWEAHIWQD-----GKQIYLGGFDGEEQAALAYDIAAVKCRG 403
                    79****************9993.....3**********************98876 PP
2AP233.88.4e-11450500155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+++GV+ +  +g+W+A+I   +   g +k+ +lg + t++ Aa a+++ + +l+g
  Bathy01g05740 450 SKFRGVTKHQ-KGKWEARIGQlV---G-KKYKYLGLHETEDAAAMAYDEEAVRLKG 500
                    79*****999.7******99977...2.5**********99********9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.47E-16354413IPR016177DNA-binding domain
PfamPF008471.2E-7354403IPR001471AP2/ERF domain
CDDcd000181.64E-19354411No hitNo description
SMARTSM003806.9E-26355417IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-14355412IPR001471AP2/ERF domain
PROSITE profilePS5103216.278355411IPR001471AP2/ERF domain
CDDcd000189.41E-20450510No hitNo description
SuperFamilySSF541711.44E-14450510IPR016177DNA-binding domain
PfamPF008472.4E-5450493IPR001471AP2/ERF domain
SMARTSM003801.1E-25451514IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-14451508IPR001471AP2/ERF domain
PROSITE profilePS5103214.974451508IPR001471AP2/ERF domain
PRINTSPR003673.6E-5452463IPR001471AP2/ERF domain
PRINTSPR003673.6E-5490510IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MSHPHRQHPQ LTVFPAIQTS LVVSKKNKIR AGVALPHLNT NTIGLTQREE EEKENSPNTQ  60
SLLLGAFAAV EHKDDEDEDV DDFLKNKYDE EEEEEEEEDT NGCFASLGNL EEEEEEEYEA  120
RGGEKESSFL QFLKTSGFGN VSPIAPPLDD KYNNYDTKTA HTTWSSESND EFGFPISLAA  180
PEAMTRESSM NDFSHLFGNY EKTHKDVLDA IEKERSAMDQ MQLILTQPPQ PPPQPTLVRT  240
LNDGISAPPA MPPQMENVVM KRRPGRPRKL FPSIKKSNTP KKRKKSNKDD EDGEVLVETR  300
EGNLSPDLDV QLLASRNRES SLNAVNDAVG NNDSSKNNNK SVSRESKKSA RSTSKFRGVT  360
HHCRTGRWEA HIWQDGKQIY LGGFDGEEQA ALAYDIAAVK CRGISAITNF DRSNYSRELA  420
SLQQVNEREL ILSLRRQSKG PGGVTKKSSS KFRGVTKHQK GKWEARIGQL VGKKYKYLGL  480
HETEDAAAMA YDEEAVRLKG FDAVTNFDIS EYADVLAEHH TNKMKEAVAL KEKYAARCTA  540
VSVPMGSLNP SPHELPNTSE RRVTTRSSAA TTNTVQKRRT TTTTIASNTK KQRELVPHVL  600
GPAAATTPST NALNAVKFFF NNSKPQTREE KEDEDEDEKY NQDEEVDEDD AFEYGTTDNM  660
HQSRDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279285PKKRKKS
2280284KKRKK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515565.10.0floral homeotic protein
TrEMBLK8E9X00.0K8E9X0_9CHLO; Floral homeotic protein
STRINGXP_007515565.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-39AINTEGUMENTA-like 5