PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g03110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family LSD
Protein Properties Length: 220aa    MW: 22276 Da    PI: 8.3407
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g03110genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.43.2e-1083107125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    C+gC + L++ +GA+ V+CalC+t+
  Bathy01g03110  83 CQGCTVRLMFHLGATQVQCALCHTI 107
                    ***********************97 PP

2zf-LSD126.51.1e-08134158125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    C gC+++L+Y+rGA+sV C  C+ V
  Bathy01g03110 134 CRGCGVTLMYTRGATSVSCGACHVV 158
                    99*********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF069437.6E-61436IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-41437IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.8E-881110IPR005735Zinc finger, LSD1-type
PfamPF069436.1E-783107IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-5133159IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-7134158IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPRITCTGTP QQRGCGTVLV HPPSAQFVRC AVCSAITACA AASSSSASGG NPLSSSSSNA  60
GGGFVRNNRG GGANAREMAA IHCQGCTVRL MFHLGATQVQ CALCHTINRV ASNNNNGNGG  120
GGHVERQDVS HCRCRGCGVT LMYTRGATSV SCGACHVVTN TAGIAAEGGG VNSTASKSSV  180
GEEERELVVV ENPPVKLRDG RVVPNVSVAV EIHNVNDTK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515372.11e-155zinc finger protein (LSD1)
TrEMBLK8E9C61e-154K8E9C6_9CHLO; Zinc finger protein (LSD1)
STRINGXP_007515372.11e-154(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46131111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-14lsd one like 1