PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy01g03110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | LSD | ||||||||
Protein Properties | Length: 220aa MW: 22276 Da PI: 8.3407 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.4 | 3.2e-10 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC + L++ +GA+ V+CalC+t+ Bathy01g03110 83 CQGCTVRLMFHLGATQVQCALCHTI 107 ***********************97 PP | |||||||
2 | zf-LSD1 | 26.5 | 1.1e-08 | 134 | 158 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+++L+Y+rGA+sV C C+ V Bathy01g03110 134 CRGCGVTLMYTRGATSVSCGACHVV 158 99*********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06943 | 7.6E-6 | 14 | 36 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.5E-4 | 14 | 37 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.8E-8 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.1E-7 | 83 | 107 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-5 | 133 | 159 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-7 | 134 | 158 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MPRITCTGTP QQRGCGTVLV HPPSAQFVRC AVCSAITACA AASSSSASGG NPLSSSSSNA 60 GGGFVRNNRG GGANAREMAA IHCQGCTVRL MFHLGATQVQ CALCHTINRV ASNNNNGNGG 120 GGHVERQDVS HCRCRGCGVT LMYTRGATSV SCGACHVVTN TAGIAAEGGG VNSTASKSSV 180 GEEERELVVV ENPPVKLRDG RVVPNVSVAV EIHNVNDTK* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082278 | 0.0 | FO082278.1 Bathycoccus prasinos genomic : Chromosome_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007515372.1 | 1e-155 | zinc finger protein (LSD1) | ||||
TrEMBL | K8E9C6 | 1e-154 | K8E9C6_9CHLO; Zinc finger protein (LSD1) | ||||
STRING | XP_007515372.1 | 1e-154 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-14 | lsd one like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 19018046 |