PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g02870
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 690aa    MW: 77140.5 Da    PI: 11.3811
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g02870genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10560601346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT +E el+++a +q+G++ +++I r ++  Rt+ q+k +++k
    Bathy01g02870 560 KWTRQETELFYKAMEQFGTD-FTLIQRLFP-SRTRRQVKAKYLK 601
                      8*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.0E-24551634No hitNo description
SuperFamilySSF466893.59E-11552602IPR009057Homeodomain-like
PROSITE profilePS5129311.698556607IPR017884SANT domain
SMARTSM007172.0E-10557605IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-7559600IPR009057Homeodomain-like
CDDcd001671.01E-7560601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MVAKKKKIAA SKPGAPPASS PVTGKKKTIH ATTTTTTGDD HRAHRAQEQQ QKEQKQQQQP  60
PQQQQQQQRV SRLGKAVQDA ATIKKKPKNK GQHQHQAKKK STVIPMMNRM DSRVDPSRMG  120
KNRSREGTSE RLTPRTQSQS QQRMPAPRRP GGIDASMLSS PHRVTSPERA AAGRMQSPAV  180
AAQREKELRA QMQQKREREE REKRAMQQQQ QQREKAEQEK QKKLQREREA QMQRQREQQQ  240
QREQQQRQQR EQQQRQQQLL LQQQQQQQQQ QQQQQQQQPA QQQERRVPRQ PLPRTRAPPA  300
PVPSKAVPRQ PVGRVGVSVP PPEPPQQAAQ PRLVDNVVFS EPQPTSIRDI MVRKARDERK  360
AEMHARKEKR RRDQLLTLPS GLMFGDGVGS LEDGENQPQA TGGTPTLVHF AEDANKDQNG  420
TKETPAAENG RRTRLRSSSL GAAAGEKPSA TAAPSAKAPN VKTTGAAGLL KSALKKVSQV  480
ANALALANAP TAAAQQQQAQ NVHTPRVKLG PNGQIVADQA TLTVQASHEN RISESEFTRK  540
TGDKMMINSQ TYGNRSKPTK WTRQETELFY KAMEQFGTDF TLIQRLFPSR TRRQVKAKYL  600
KEQNNNDDRI ESCMNNMARN NETYQNLIDV LQSDTNNRVE VAAGKGVDRI IPGANNVAAQ  660
VLHGDAPMQE NVQNTVPQAS ISAATPAAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6eu0_V6e-15507603364462Transcription factor TFIIIB component B''
6f40_W6e-15507603364462Transcription factor TFIIIB component B''
6f41_W6e-15507603364462Transcription factor TFIIIB component B''
6f42_W6e-15507603364462Transcription factor TFIIIB component B''
6f44_W6e-15507603364462Transcription factor TFIIIB component B''
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18399KKKPKNKGQHQHQAKKK
2365372RKEKRRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515442.10.0conserved hypothetical protein
TrEMBLK8E9I40.0K8E9I4_9CHLO; Uncharacterized protein
STRINGXP_007515442.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-16MYB_related family protein