PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639839.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 366aa MW: 40230.3 Da PI: 6.8235

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	29.4	1.8e-09	291	345	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAt..PktilelmkvkgLtlehvkSHLQkYR 54 +rl Wt +L ++F ea+++LGG At ++++lm+ ++t ++++ +Q R XP_013639839.1 291 TRLFWTDQLKQAFNEAIQSLGGLYSATvtAEQVKKLMEDLDVTESQIANRIQNLR 345 69******************9998633789**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-8	290	346	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-7	292	347	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSNNINLQRS MEEIDRAQTI PEKIAIIQGY LKKLEDGKKE RAEWRKQLEE KANRLQEQRN 60 ALKDQRKAIE DEKKQIEDLK KSDMDDDQKK AIAAQLKAVE DREKLLQSQE NATEDQVKEV 120 EIQKKHAEDV DPAQDADTIL LSTTLQNLVD SSAPLPPPAT ASPSGPSTSL RLAPPATTSS 180 TGPSTSLTLA PPAPSESSLS AAPTFPRSQT GASSFSSLQP PQQRIMPNPP ESYLPRPPSS 240 FNPFRPPQHT SEIVLTSPAF ATLPIFPPRN ISTQPLLVGP PTVPLGPRNA TRLFWTDQLK 300 QAFNEAIQSL GGLYSATVTA EQVKKLMEDL DVTESQIANR IQNLRRKKHP RDDDGGGSSS 360 AAKKLC

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSNNINLQRS MEEIDRAQTI PEKIAIIQGY LKKLEDGKKE RAEWRKQLEE KANRLQEQRN  60
ALKDQRKAIE DEKKQIEDLK KSDMDDDQKK AIAAQLKAVE DREKLLQSQE NATEDQVKEV  120
EIQKKHAEDV DPAQDADTIL LSTTLQNLVD SSAPLPPPAT ASPSGPSTSL RLAPPATTSS  180
TGPSTSLTLA PPAPSESSLS AAPTFPRSQT GASSFSSLQP PQQRIMPNPP ESYLPRPPSS  240
FNPFRPPQHT SEIVLTSPAF ATLPIFPPRN ISTQPLLVGP PTVPLGPRNA TRLFWTDQLK  300
QAFNEAIQSL GGLYSATVTA EQVKKLMEDL DVTESQIANR IQNLRRKKHP RDDDGGGSSS  360
AAKKLC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639839.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232562	7e-66	AC232562.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH054E04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639839.1	0.0	PREDICTED: uncharacterized protein DDB_G0284459-like
TrEMBL	A0A0D3CIL4	0.0	A0A0D3CIL4_BRAOL; Uncharacterized protein
STRING	Bo5g115620.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23623	2	2