PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013639670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 281aa MW: 31104.1 Da PI: 9.5345 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++G + Wk+I +g +t q++s+ qky XP_013639670.1 39 RESWTEEEHDKFLEALQLFGRD-WKKIEDFVG-SKTVIQIRSHAQKY 83 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-18 | 33 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.746 | 34 | 88 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-19 | 37 | 86 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-12 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-13 | 39 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 39 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.23E-10 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSSSLSRNPT SAEAPQSTDA VAEGSSKKVR KPYTITKSRE SWTEEEHDKF LEALQLFGRD 60 WKKIEDFVGS KTVIQIRSHA QKYFLKVQKN GTLAHVPPPR PKRKAAHPYP QKASKNAQMQ 120 LQVSTSWDDA SMLLNTVISP HQEHATFRGA QGPLNVSSPS TSGMGSSSRT ISGSEIVAKQ 180 PMVVLQGVPD FAEVYSFIGS VFDPETRLDH VEKLKEMDPI NFETVLLLTR NLTVNLSNPE 240 FESALQRKAL SLYVVNTELP SVTTGSFFQN STSDLNKGIS H |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013639670.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937213 | 2e-68 | AJ937213.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like5 (lcl5 gene), variant 1. | |||
GenBank | AY091106 | 2e-68 | AY091106.1 Arabidopsis thaliana unknown protein (At3g09600) mRNA, complete cds. | |||
GenBank | AY122969 | 2e-68 | AY122969.1 Arabidopsis thaliana unknown protein (At3g09600) mRNA, complete cds. | |||
GenBank | AY550307 | 2e-68 | AY550307.1 Arabidopsis thaliana MYB transcription factor (At3g09600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639670.1 | 0.0 | PREDICTED: protein REVEILLE 8-like isoform X4 | ||||
Swissprot | Q8RWU3 | 1e-152 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A0D3AEV8 | 1e-177 | A0A0D3AEV8_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g144410.1 | 1e-178 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-114 | MYB_related family protein |
Publications ? help Back to Top | |||
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