PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639475.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 315aa    MW: 36147.7 Da    PI: 8.4734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-101238127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++t+ C+f++rtG C yG++C+++H++
  XP_013639475.1 12 PGTKDCQFYLRTGRCGYGENCCYNHPK 38
                    689**********************96 PP
2zf-CCCH22.71.7e-074870427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C+ff+r G Ck G+ C F H++
  XP_013639475.1 48 PKCKFFLR-GKCKNGSHCDFDHSK 70
                    78******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.1971139IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-61138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-61138IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-81238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-51438IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4934471IPR000571Zinc finger, CCCH-type
SMARTSM003560.00524470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-64769IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-54770IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMVESSEYPV RPGTKDCQFY LRTGRCGYGE NCCYNHPKEI PTGEINMPKC KFFLRGKCKN  60
GSHCDFDHSK EGDGAEHTRQ GQKRYKTEST SRSSPSPEKR KHRQEDIDKQ STEAEDILQG  120
EKLREMQEND NDQQKLVEQR KRDIERQRRD ARLSLEQKHD DVEKFRSIIS HMGHYSEIAE  180
KSVEIFVSAI SSSRYSGSGS RASCLSAPLK DIHNTCSLPK LNISKFGYAS SSLTKSRKLS  240
IWELRFSGGD CGFFQWFDEG EAFGWQKKAL IEARNEICQK DKTIMGLKKT ISMLQSELAK  300
NAKVEEDIIN TFLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893179e-99AC189317.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036B21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639475.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 9
TrEMBLA0A078JLS71e-113A0A078JLS7_BRANA; BnaCnng50350D protein
TrEMBLA0A0D3CEK11e-113A0A0D3CEK1_BRAOL; Uncharacterized protein
STRINGBo5g060890.11e-114(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-18C3H family protein