PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639359.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 271aa    MW: 29647.3 Da    PI: 10.09
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639359.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA933.7e-29118177258
       CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +++VN+KQy++I++RRq+Rak+++   ++kl++++rkpy+h+SRh hAlrRpRgsgGrF
  XP_013639359.1 118 GTIFVNSKQYHAIIRRRQSRAKAAAvldQNKLSSRGRKPYMHHSRHLHALRRPRGSGGRF 177
                     689*********************9999*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.4E-30115180IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.99116180IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-20119141IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-23119177IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-20154177IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAMQTGPQIS WWNAFRSQPV SLAGDSDSFG SAVETEHGVD KQNNSATHLA FSLGDVKSSR  60
VVPKPHGAAF SVQPPCLELG FTQQQMYPCV EQQYYGVVSA YGSQSRVMLP LNMETEDGTI  120
FVNSKQYHAI IRRRQSRAKA AAVLDQNKLS SRGRKPYMHH SRHLHALRRP RGSGGRFLNT  180
KSGTNAKKAD GTKQTQSQAI SQQSNSQNSE VLHPESGTMN LSTGLNVSGS EVTSMNYFLS  240
SPVHRLGGMV MPTKWTASVA AMDNGCCYFK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-16117178260HAPB protein
4g92_A1e-16117178260HAPB protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639359.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529911e-155AK352991.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639359.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639362.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639364.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639369.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
RefseqXP_013639374.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
SwissprotQ9M9X41e-157NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A0D3AFG30.0A0A0D3AFG3_BRAOL; Uncharacterized protein
STRINGBo1g150420.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-151nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]