PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013639066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29595.9 Da PI: 5.3404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.9 | 2.9e-34 | 5 | 149 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvkaeekewyfFskrdkkyatgkrknratksgyW 83 +Gf F+Ptdeelv +yL++k+ g++ ++e+i+ev+i +++Pw+L++ kvk+++ wyfFs+rd +g+r+nr t+sg+W XP_013639066.1 5 VGFGFRPTDEELVGYYLHNKILGQNWLVQEFISEVNISDFDPWNLRSslgvslsvslsvqsKVKSRDLVWYFFSRRDA---NGDRQNRRTSSGFW 96 7************************999999**************855899****9988777777777******9987...799*********** PP NAM 84 katgkdkevlsk......kgelvglkktLvfykgrapkge..ktdWvmheyrl 128 k tg +v+++ ++g kk+Lvf gr+++++ k+dWv+hey+ XP_013639066.1 97 KITGDPVDVKDQwgtwcgFAGKIGYKKVLVFRMGRSSSSQspKSDWVIHEYHY 149 ***********98777765556**********8866554444*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.924 | 3 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-23 | 5 | 148 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-38 | 5 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDGIVGFGFR PTDEELVGYY LHNKILGQNW LVQEFISEVN ISDFDPWNLR SSLGVSLSVS 60 LSVQSKVKSR DLVWYFFSRR DANGDRQNRR TSSGFWKITG DPVDVKDQWG TWCGFAGKIG 120 YKKVLVFRMG RSSSSQSPKS DWVIHEYHYT LVPENQRTYV ICRLEYKGHD MSILSSNPTD 180 PVPTFVPDAA NSTASGSVVS QSVQGNLGSF NTFFDYDSAN QGQWFSGDFN LEQPVVPYDD 240 GTYRIWDYVV EENFSRYRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-18 | 6 | 167 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-18 | 6 | 167 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-18 | 6 | 167 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-18 | 6 | 167 | 20 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-18 | 6 | 167 | 23 | 168 | NAC domain-containing protein 19 |
3ulx_A | 1e-18 | 6 | 148 | 18 | 139 | Stress-induced transcription factor NAC1 |
4dul_A | 1e-18 | 6 | 167 | 20 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-18 | 6 | 167 | 20 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013639066.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639066.1 | 0.0 | PREDICTED: NAC domain-containing protein 1-like | ||||
Swissprot | Q0WV96 | 1e-82 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | A0A0D3C712 | 0.0 | A0A0D3C712_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 3e-72 | NAC domain containing protein 1 |
Publications ? help Back to Top | |||
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