PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 257aa MW: 28894.8 Da PI: 7.8013 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.5 | 5.6e-33 | 24 | 134 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k ltpsdv+k++rlv+pk++ae++ +++e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F+ XP_013638984.1 24 FEKSLTPSDVGKLNRLVIPKQHAERYlplnncgggddvTESTEKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDKHLNAGDVVLFQ 118 99********************************99996677899************************************************** PP E-SS.SEE..EEEEE-S CS B3 84 ldgr.sefelvvkvfrk 99 ++ r + +l+++++r+ XP_013638984.1 119 RH-RfDIHRLFIGWRRR 134 65.44888899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 16 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-31 | 19 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.63E-29 | 23 | 123 | No hit | No description |
SMART | SM01019 | 5.2E-25 | 24 | 135 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.761 | 24 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-30 | 24 | 134 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSVNHYSNTL SSHNHHNDHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD 60 VTESTEKGVL LSFEDESGKS WKFRYSYWNS SQSYVLTKGW SRYVKDKHLN AGDVVLFQRH 120 RFDIHRLFIG WRRRGETSSS SAVSAVSQDP RANTTAFWNG LTTPYRQVHA STSSYPNNIH 180 QGYSHYGPVA ETPTVVAGSS RTVRLFGVNL ECHSDVVEPP PCPDAYNGQH IYYYSTPHPM 240 NISFAGEAME QVGDGRG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 8e-48 | 20 | 134 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 8e-48 | 20 | 134 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638984.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189547 | 0.0 | AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638984.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g11580-like | ||||
Swissprot | Q8RYD3 | 1e-143 | Y3158_ARATH; B3 domain-containing protein At3g11580 | ||||
TrEMBL | A0A0D3CL50 | 0.0 | A0A0D3CL50_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g136360.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1220 | 28 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11580.1 | 1e-143 | B3 family protein |
Publications ? help Back to Top | |||
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