PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638956.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 383aa    MW: 43537.6 Da    PI: 9.2122
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-065981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C++ F r  nL+ H r+H
  XP_013638956.1 59 YVCEICNQGFQRDQNLQMHRRRH 81
                    9*********************9 PP
2zf-C2H214.10.00013138160123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+k +  +s++k H++t+
  XP_013638956.1 138 WVCDRCSKGYAVQSDYKAHLKTC 160
                     58*******************98 PP
3zf-C2H211.20.0012168186523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr +++  H+ t+
  XP_013638956.1 168 DCGRVFSRVESFIEHQDTC 186
                     9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-55682No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355160102132IPR015880Zinc finger, C2H2-like
SMARTSM00355100138165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MIDFEKNINH PSSSSSDLLL AINGTTVNNK RKRRPAGTPD PDAEVVSLSP RTLLESDRYV  60
CEICNQGFQR DQNLQMHRRR HKVPWKLLKR EKKDEEVRKR VYVCPEPTCL HHNPCHALGD  120
LVGIKKHFRR KHSAHKQWVC DRCSKGYAVQ SDYKAHLKTC GSRGHSCDCG RVFSRVESFI  180
EHQDTCTIRR PQPTNPPRPL QQNTSCHATP SITLSTTSIG PLLHGLPMLR PPQASHQQAL  240
ASAYPLNASS SSYESLQLQL SIGMAKTSSN LKRSEKGEMS LALERANEEA RRADEMRQEA  300
KRQVEMAEMD FERAKNIRED AKAELEKAQF VREEAMKRIK ATILEITCRS CKQLFQLPVM  360
ADESKTSLVM SYVSSARTEG EFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-16134186355Zinc finger protein JACKDAW
5b3h_F1e-16134186355Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves, hypocotyls, roots, vasculature of cotyledons, floral organs and in the endodermis and vasculaturenof inflorescence stems. {ECO:0000269|PubMed:24039602}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638956.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638956.10.0PREDICTED: protein indeterminate-domain 16-like
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLA0A0D3CDA30.0A0A0D3CDA3_BRAOL; Uncharacterized protein
STRINGBo5g043540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.11e-165indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]