PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638954.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 319aa    MW: 37007.1 Da    PI: 6.9125
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31162215255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+v++Ltl+hvkSHLQ+YR+
  XP_013638954.1 162 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT 215
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.02E-15159216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27160216IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-23162216IPR006447Myb domain, plants
PfamPF002499.6E-7163214IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MELFPSQPDL YLKINRRREE QEEEDYKEQE EDYKEQEEVQ RRLLFGSKAS DSDRKASDHL  60
IHTLQFTSNN EPTKIDHNQE RMESLDQDLR SNFMVRPIRG IPLHQNQILD HYYYSPTPPF  120
FFSEVNGQHA NPSYSYNLHH RHHRQVQPQA QRLTAKRGVR APRMRWTTTL HAHFVHAVQL  180
LGGHERATPK SVLELMDVQD LTLAHVKSHL QMYRTIKSTE KPTTSSDIGQ SDTCENELKV  240
NSERHARDLQ GLWSNSSSEA RFHLKAKASG LDMSSNKNVD QRCPSYERLS SDSSSLTGTR  300
PEIETPNLEF TLAIPNLPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-16163217357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-16163217458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534550.0AK353455.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-31-C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638954.10.0PREDICTED: probable transcription factor KAN3
SwissprotQ941I21e-163KAN3_ARATH; Probable transcription factor KAN3
TrEMBLA0A0D3A3V50.0A0A0D3A3V5_BRAOL; Uncharacterized protein
STRINGBo1g017770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139841825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-152G2-like family protein