PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638808.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 254aa    MW: 28521.2 Da    PI: 4.5224
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638808.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.72.3e-373592461
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                    +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  XP_013638808.1 35 TAPPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 92
                    5668**************************************************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-253486IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5283791IPR003851Zinc finger, Dof-type
PfamPF027011.0E-313791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MMLPYNAYNS YQHQFPSPEL EIPEKWKVPY GHDETAPPCP RCASSNTKFC YYNNYSLSQP  60
RYFCKGCRRY WTKGGSLRNI PVGGGCRKRS RSRHNSHKRF GQNENLQRDG LINQDDGSQA  120
SHAGSVIDLA AVFAQYVTNG SPSSTDNTTG SDQDSPVTTT TTNHALDSLT WDICQETDVN  180
LGFSGTEKIQ DGFGQFLQED EEEMFEFQGL LDDKEIQEIL DCSFSDEPDQ LISQGSFMIN  240
GDHWSSTDLA TFGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18792KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638808.10.0PREDICTED: dof zinc finger protein DOF1.2
SwissprotP683491e-148DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLA0A0D3CC200.0A0A0D3CC20_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ETK90.0A0A3P6ETK9_BRAOL; Uncharacterized protein
STRINGBo5g034260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-139Dof family protein